Metapresence is a Python tool to calculate metrics to assess the evenness of the coverage distribution on DNA sequences, in order to infer their presence in a given sample.
☆10Feb 18, 2025Updated last year
Alternatives and similar repositories for metapresence
Users that are interested in metapresence are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A repo to reproduce the experiments in the YACHT manuscript☆12Nov 2, 2023Updated 3 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆38Updated this week
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆16Aug 28, 2024Updated 2 years ago
- ☆14Sep 2, 2021Updated 5 years ago
- ☆16Jun 2, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Jaeger is a quick and precise tool for detecting viruses in sequence assemblies.☆10Oct 14, 2026Updated 3 weeks ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆25Sep 27, 2026Updated last month
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated 2 years ago
- ☆10Aug 18, 2024Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆58May 8, 2026Updated 5 months ago
- ☆27Jun 20, 2023Updated 3 years ago
- ☆15Oct 14, 2023Updated 3 years ago
- ☆18Jun 5, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- MICROPHERRET: MICRObial PHEnotypic tRait ClassifieR using machine lEarning Techniques☆15Oct 25, 2026Updated last week
- MAGScoT - a MAG scoring and refinement tool☆51Apr 8, 2026Updated 6 months ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆40Oct 1, 2026Updated last month
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆57Sep 28, 2026Updated last month
- ☆20Nov 11, 2024Updated last year
- Tool for unsupervised contig binning from viral metagenomes☆18Oct 22, 2021Updated 5 years ago
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆22Nov 25, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 4 months ago
- Metagenomic Binning Algorithm☆56Updated this week
- ☆86Aug 23, 2026Updated 2 months ago
- GCUA - General Codon Usage Analysis (v2)☆11Nov 5, 2025Updated 11 months ago
- The gview wiki migrated to GitHub.☆12Sep 3, 2020Updated 6 years ago
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 6 months ago
- A Snakemake workflow for recovery of plastid genomes from metagenomic samples☆11Nov 16, 2024Updated last year
- Metax: Accurate Cross-Domain Taxon Profiling via a Probabilistic Model of Genome Coverage☆40Oct 12, 2026Updated 3 weeks ago
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 11 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆49Jun 19, 2026Updated 4 months ago
- PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies☆10Jun 14, 2026Updated 4 months ago
- Hydrocarbon biodegradation gene annotation☆20Jul 14, 2022Updated 4 years ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆39Aug 28, 2026Updated 2 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆26Feb 14, 2026Updated 8 months ago
- ☆19Updated this week