dnanexus / dxWDLLinks
Workflow Description Language compiler for the DNAnexus platform
☆42Updated 2 years ago
Alternatives and similar repositories for dxWDL
Users that are interested in dxWDL are comparing it to the libraries listed below
Sorting:
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆38Updated this week
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated last month
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆71Updated 3 months ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- WDL plugin for pytest☆49Updated 2 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆59Updated 2 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- Python client for GA4GH htsget protocol☆15Updated 3 years ago
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆33Updated 9 months ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆88Updated this week
- Create WDL documentation using Markdown.☆28Updated last month
- NextSeq specific bcl2fastq2 wrapper.☆55Updated 4 years ago
- Server wrapper that turns command line tools into web services☆60Updated 7 years ago
- Scalable RNA-seq analysis☆73Updated 5 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 3 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated last year
- Generic human DNA variant annotation pipeline☆59Updated last year
- An awk-like VCF parser☆56Updated 2 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 9 years ago