dnanexus / dxWDL
Workflow Description Language compiler for the DNAnexus platform
☆40Updated last year
Alternatives and similar repositories for dxWDL:
Users that are interested in dxWDL are comparing it to the libraries listed below
- conda recipes for genomic data☆85Updated 3 years ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆63Updated 2 weeks ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- WDL tools for parsing, type-checking, and more☆25Updated this week
- WDL plugin for pytest☆48Updated last year
- The Ensembl Variation Perl API and SQL schema☆28Updated this week
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆22Updated 2 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆36Updated last week
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 7 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆28Updated 4 years ago
- Assembly Based ReAligner☆73Updated 6 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 7 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- ☆30Updated 8 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 9 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆96Updated 5 years ago
- ☆82Updated 6 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆33Updated 7 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 4 months ago
- Tools for querying and analysis of genomic data☆27Updated 4 months ago
- Consensus assembly and variant calling workflow.☆12Updated 9 years ago