lh3 / PortableCrystal
Portable Crystal binary distributions for Linux on x86_64
☆15Updated 4 years ago
Alternatives and similar repositories for PortableCrystal:
Users that are interested in PortableCrystal are comparing it to the libraries listed below
- A command line program for large scale buffering between piped programs☆15Updated 3 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated this week
- Python bindings to minimap2☆16Updated 7 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- drunk on perbase pileups and lua expressions☆18Updated this week
- Command line tools for IntSpan related bioinformatics operations☆13Updated 3 weeks ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆44Updated 2 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- For bluntifying overlapped GFAs☆13Updated 9 months ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆15Updated 4 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- ziglang + htslib☆20Updated 3 years ago
- ☆13Updated 3 months ago
- nimble aligner that will map your reads to the references on a laptop☆12Updated 7 years ago
- A hash map using the BooPHF perfect hash function☆12Updated 8 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14Updated this week
- fast, reliable and handy demultiplexing tool for fastx files☆14Updated last week
- DNA kmer operations for nim☆14Updated 3 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated last year
- SQL-like query language for the SAM/BAM file format☆28Updated last year
- Hail: extract lines from a file, a la `head -n x | tail -n y`☆9Updated 4 years ago
- Toolkit for manipulating FASTA and SAM files☆18Updated last year
- useful command-line tools written to showcase hts-nim☆49Updated 4 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- ☆27Updated last year
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated last year
- linearize and simplify variation graphs using blocked partial order alignment☆57Updated this week