common-workflow-lab / cwl-exLinks
CWL experimental grammar
☆11Updated 2 years ago
Alternatives and similar repositories for cwl-ex
Users that are interested in cwl-ex are comparing it to the libraries listed below
Sorting:
- Consensus assembly and variant calling workflow.☆12Updated 10 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- Convert CWL to WDL☆17Updated 9 years ago
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆78Updated 7 months ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Updated 4 years ago
- CWL for GDC DNASeq workflows☆23Updated 3 months ago
- ☆11Updated 9 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 4 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Updated 6 years ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated this week
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 2 months ago
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Updated 3 years ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 5 months ago
- Generate and process BAM files from Illumina sequencing instrument files☆23Updated 9 years ago
- Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:☆17Updated last year
- The WES API is a standard way to run and manage portable workflows.☆85Updated 3 weeks ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- Request for comments on interchangeable bioinformatics containers☆39Updated 6 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- Server wrapper that turns command line tools into web services☆60Updated 7 years ago
- Workflow Description Language compiler for the DNAnexus platform☆42Updated 2 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- X things you should take into consideration if you code for big data analysis☆23Updated 7 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Updated 6 years ago
- DEPRECIATED! Please use nf-core/tools instead☆19Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 11 months ago