Alternatives and similar repositories for cwl-ex

Users that are interested in cwl-ex are comparing it to the libraries listed below

• adamstruck / cwl2wdl
  Convert CWL to WDL
  ☆17Updated 9 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago
• ga4gh / workflow-execution-service-schemas
  The WES API is a standard way to run and manage portable workflows.
  ☆85Updated last month
• common-workflow-language / workflow-service
  Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
  ☆36Updated 2 weeks ago
• nmdp-bioinformatics / flow
  Consensus assembly and variant calling workflow.
  ☆12Updated 10 years ago
• NCI-GDC / gdc-dnaseq-cwl
  CWL for GDC DNASeq workflows
  ☆23Updated 2 months ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 7 years ago
• ga4gh / task-execution-server
  ☆11Updated 8 years ago
• iobio / minion
  Server wrapper that turns command line tools into web services
  ☆60Updated 7 years ago
• common-workflow-library / bio-cwl-tools
  CWL CommandLineTool descriptions for biology/life-sciences related applications
  ☆78Updated 6 months ago
• bioinformed / vgraph
  vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…
  ☆43Updated 4 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆42Updated 2 years ago
• rabix / bunny
  [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
  ☆75Updated 4 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• disq-bio / disq
  A library for manipulating bioinformatics sequencing formats in Apache Spark
  ☆32Updated last month
• roryk / tiny-test-data
  Super small biological datasets for unit testing
  ☆61Updated 5 years ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆44Updated 2 years ago
• stjudecloud / workflows
  Bioinformatics workflows developed for and used on the St. Jude Cloud project.
  ☆38Updated this week
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• workflux / workflUX
  An open-source, cloud-ready web application for simplified deployment of big data workflows.
  ☆33Updated 4 months ago
• biocompute-objects / BCO_Documentation
  Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:
  ☆17Updated last year
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• ga4gh / task-execution-schemas
  ☆92Updated last week
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆19Updated 6 years ago
• raphael-group / AncesTree
  An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data
  ☆14Updated 7 years ago
• quinlan-lab / vcftidy
  normalize, left-align, trim, validate and clean VCF files
  ☆20Updated 10 years ago
• sbg / sevenbridges-cwl
  Seven Bridges Python library for programatic generation of CWL workflows.
  ☆20Updated 2 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated 2 years ago
• broadinstitute / wdl
  Workflow Description Language - Specification and Implementations
  ☆26Updated 6 years ago
• yakneens / butler
  Butler is a framework for running scientific workflows on public and academic clouds.
  ☆69Updated 5 years ago