Workflow Description Language developer tools & local runner
☆201May 24, 2026Updated this week
Alternatives and similar repositories for miniwdl
Users that are interested in miniwdl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of reusable WDL tasks. Category:Other☆89Apr 8, 2026Updated last month
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 6 months ago
- Specification for the Workflow Description Language (WDL).☆850May 20, 2026Updated last week
- WDL plugin for pytest☆48Aug 1, 2023Updated 2 years ago
- Workflow Description Language compiler for the DNAnexus platform☆43Jun 29, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Configure workflow/pipeline tests using yaml files.☆69Aug 4, 2024Updated last year
- Vim syntax highlighting for WDL☆20Jul 28, 2021Updated 4 years ago
- Warp Analysis Research Pipelines☆226May 22, 2026Updated last week
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,064May 20, 2026Updated last week
- Rich IDE support for Workflow Description Language☆42Mar 28, 2025Updated last year
- WDL tools for parsing, type-checking, and more☆28May 2, 2026Updated 3 weeks ago
- CLI for interacting with Cromwell servers☆54Apr 2, 2024Updated 2 years ago
- Educational materials for learning WDL☆129Mar 2, 2024Updated 2 years ago
- viral-ngs: complete pipelines☆73May 22, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Sep 27, 2023Updated 2 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Feb 5, 2024Updated 2 years ago
- ☆93Feb 25, 2026Updated 3 months ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 5 months ago
- Design specs and prototypes for the HCA Data Storage System (DSS, "blue box")☆41Feb 12, 2026Updated 3 months ago
- Visualizer of CWL (Common Workflow Language) workflows for Vue☆30Dec 7, 2022Updated 3 years ago
- A structural variation pipeline for short-read sequencing☆202May 22, 2026Updated last week
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆44May 21, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample☆26May 4, 2023Updated 3 years ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆36May 28, 2025Updated last year
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Sep 17, 2023Updated 2 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Feb 14, 2021Updated 5 years ago
- A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).☆931May 21, 2026Updated last week
- Open workflow definitions for genomic analysis from MGI at WUSM.☆105Jun 23, 2025Updated 11 months ago
- The WES API is a standard way to run and manage portable workflows.☆91Feb 20, 2026Updated 3 months ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Nov 17, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An app store for scientific workflows, tools, notebooks, and services☆130May 23, 2026Updated last week
- Official code repository for GATK versions 4 and up☆1,950May 21, 2026Updated last week
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆72Apr 6, 2026Updated last month
- Rust crates for working with Workflow Description Language (WDL) documents.☆62Sep 23, 2025Updated 8 months ago
- Microsoft Genomics implementation of the Broad Institute's Cromwell workflow engine on Azure☆141May 16, 2025Updated last year
- Python library & CLI to create, view and edit PFB files☆14Apr 24, 2026Updated last month
- ☆70May 19, 2026Updated last week