Workflow Description Language developer tools & local runner
☆206Nov 2, 2026Updated this week
Alternatives and similar repositories for miniwdl
Users that are interested in miniwdl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of reusable WDL tasks. Category:Other☆88Sep 29, 2026Updated last month
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 11 months ago
- WDL plugin for pytest☆49Aug 1, 2023Updated 3 years ago
- Specification for the Workflow Description Language (WDL).☆855Sep 14, 2026Updated last month
- Workflow Description Language compiler for the DNAnexus platform☆43Jun 29, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Configure workflow/pipeline tests using yaml files.☆71Aug 4, 2024Updated 2 years ago
- Automatic Input Documentation for WDL workflows☆12Sep 5, 2024Updated 2 years ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,083Updated this week
- Warp Analysis Research Pipelines☆232Updated this week
- Vim syntax highlighting for WDL☆20Jul 28, 2021Updated 5 years ago
- Educational materials for learning WDL☆128Mar 2, 2024Updated 2 years ago
- Rich IDE support for Workflow Description Language☆42Mar 28, 2025Updated last year
- CLI for interacting with Cromwell servers☆53Apr 2, 2024Updated 2 years ago
- WDL tools for parsing, type-checking, and more☆28May 2, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- viral-ngs: complete pipelines☆75Oct 24, 2026Updated 2 weeks ago
- ☆12Sep 27, 2023Updated 3 years ago
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Feb 5, 2024Updated 2 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 5 years ago
- A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).☆936Updated this week
- A structural variation pipeline for short-read sequencing☆210Updated this week
- Design specs and prototypes for the HCA Data Storage System (DSS, "blue box")☆41Feb 12, 2026Updated 8 months ago
- ☆98Sep 24, 2026Updated last month
- Open workflow definitions for genomic analysis from MGI at WUSM.☆107Jun 23, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The WES API is a standard way to run and manage portable workflows.☆93Jun 11, 2026Updated 4 months ago
- Collection of bioinformatics-related WDL modules and pipelines☆28Updated this week
- requirements, examples, and tests for expression matrix file formats☆22Sep 18, 2018Updated 8 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆339May 27, 2025Updated last year
- Long read production pipelines☆152Updated this week
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Nov 17, 2021Updated 4 years ago
- Cromwell/WDL wrapper for Python☆58Feb 13, 2026Updated 8 months ago
- Visualizer of CWL (Common Workflow Language) workflows for Vue☆30Dec 7, 2022Updated 3 years ago
- Common Workflow Language reference implementation☆375Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Guides and reference material for the Workflow Description Language.☆16Aug 28, 2026Updated 2 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆45Updated this week
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 months ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆34Mar 10, 2023Updated 3 years ago
- Scalable reporting of Cromwell task call resource monitoring data to BigQuery☆10Jul 28, 2021Updated 5 years ago
- An app store for scientific workflows, tools, notebooks, and services☆132Updated this week