arq5x / grabixLinks
 a wee tool for random access into BGZF files.
☆85Updated 7 years ago
Alternatives and similar repositories for grabix
Users that are interested in grabix are comparing it to the libraries listed below
Sorting:
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Utilities to create and analyze gVCF files☆38Updated 8 years ago
- An awk-like VCF parser☆56Updated last year
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- ☆54Updated 5 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated last month
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆67Updated 11 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 4 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Fast fusion detection using kallisto☆79Updated 4 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago