arq5x / grabix
a wee tool for random access into BGZF files.
☆84Updated 6 years ago
Alternatives and similar repositories for grabix:
Users that are interested in grabix are comparing it to the libraries listed below
- conda recipes for genomic data☆85Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Fast fusion detection using kallisto☆80Updated 5 months ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 4 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Method for detecting STR expansions from short-read sequencing data☆62Updated 3 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- BigWig and BAM utilities☆95Updated last year
- An awk-like VCF parser☆56Updated last year
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Tools for bam file processing☆55Updated 9 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆43Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Mapped QC analysis program☆43Updated 6 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- ☆78Updated 11 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 6 months ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated last month
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago