arq5x / grabixLinks
a wee tool for random access into BGZF files.
☆84Updated 7 years ago
Alternatives and similar repositories for grabix
Users that are interested in grabix are comparing it to the libraries listed below
Sorting:
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- Fast fusion detection using kallisto☆80Updated 2 weeks ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- BigWig and BAM utilities☆96Updated last year
- conda recipes for genomic data☆85Updated 3 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- An awk-like VCF parser☆56Updated last year
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆63Updated 2 months ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 9 months ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- Maximum likelihood demultiplexing☆47Updated 4 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 7 months ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago