arq5x / grabixLinks
a wee tool for random access into BGZF files.
☆84Updated 7 years ago
Alternatives and similar repositories for grabix
Users that are interested in grabix are comparing it to the libraries listed below
Sorting:
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- Fast fusion detection using kallisto☆80Updated 7 months ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆32Updated 5 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 9 months ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- BigWig and BAM utilities☆96Updated last year
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- (WIP) best-practices workflow for rare disease☆60Updated 11 months ago
- High-performance error correction for Illumina resequencing data☆71Updated 9 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 8 months ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- An awk-like VCF parser☆56Updated last year
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- ☆78Updated 11 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆43Updated 5 years ago
- Tools for the analysis of structural variation in genomes☆79Updated last year