dnanexus / wdlTools
WDL tools for parsing, type-checking, and more
☆25Updated 5 months ago
Alternatives and similar repositories for wdlTools:
Users that are interested in wdlTools are comparing it to the libraries listed below
- Create WDL documentation using Markdown.☆27Updated this week
- WDL plugin for pytest☆48Updated last year
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆34Updated this week
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- A python package and a set of shell commands to handle GTF files☆45Updated 7 months ago
- ☆9Updated 2 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆41Updated last year
- Portable WDL workflows for IDseq production pipelines☆31Updated 3 years ago
- Variant Interpretation Pipeline☆23Updated this week
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated last month
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- ☆21Updated last year
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 4 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆16Updated this week
- Query language for filtering SAM/BAM reads☆31Updated 3 months ago
- ☆13Updated 7 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- A utility for merging and genotyping Illumina-style GVCFs.☆32Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆30Updated last year
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆42Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- BigWig manpulation tools using libBigWig and htslib☆28Updated 5 months ago
- Test data for MultiQC.☆20Updated this week
- ☆30Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆32Updated last week
- Generic human DNA variant annotation pipeline☆57Updated 11 months ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago