Alternatives and similar repositories for wdlTools:

Users that are interested in wdlTools are comparing it to the libraries listed below

• chanzuckerberg / idseq-workflows
  Portable WDL workflows for IDseq production pipelines
  ☆31Updated 3 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• jeremymcrae / clinical-filter
  filtering trio-based genetic variants in VCFs for clinical review
  ☆21Updated 4 years ago
• InscriptaLabs / BioCantor
  ☆22Updated last year
• openwdl / workflow-template-wdl
  ☆9Updated 6 months ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 3 years ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆32Updated last year
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 3 years ago
• stjudecloud / workflows
  Bioinformatics workflows developed for and used on the St. Jude Cloud project.
  ☆36Updated 2 weeks ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• biowdl / germline-DNA
  A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
  ☆26Updated 2 years ago
• sigven / gvanno
  Generic human DNA variant annotation pipeline
  ☆58Updated last year
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆18Updated 5 years ago
• stjudecloud / wdldoc
  Create WDL documentation using Markdown.
  ☆27Updated 3 weeks ago
• molgenis / vip
  Variant Interpretation Pipeline
  ☆25Updated last week
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆39Updated this week
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 2 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• MultiQC / test-data
  Test data for MultiQC.
  ☆22Updated this week
• dancooke / starfish
  Intersect multiple VCF files with haplotype awareness
  ☆25Updated 4 years ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated 2 years ago
• dputhier / pygtftk
  A python package and a set of shell commands to handle GTF files
  ☆48Updated 10 months ago
• sbg / smart-variant-filtering
  ☆29Updated 4 years ago
• sigven / vcf2tsvpy
  Genomic VCF to tab-separated values
  ☆47Updated 2 years ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• seppinho / mutserve
  mtDNA Variant Caller
  ☆34Updated 4 months ago
• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆27Updated 10 months ago