Bioinformatics workflows developed for and used on the St. Jude Cloud project.
☆44Sep 18, 2026Updated this week
Alternatives and similar repositories for workflows
Users that are interested in workflows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 9 months ago
- FUSE filesystem for the DNAnexus storage system☆13Apr 24, 2026Updated 4 months ago
- Public repository for the biodata resource inventory performed in 2022.☆11Nov 25, 2025Updated 9 months ago
- Rust crates for working with Workflow Description Language (WDL) documents.☆62Sep 23, 2025Updated 11 months ago
- A crate for working with genomics chain files.☆15Jul 20, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Workflow Description Language compiler for the DNAnexus platform☆43Jun 29, 2023Updated 3 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.☆58Aug 26, 2026Updated 3 weeks ago
- ☆12Sep 27, 2023Updated 2 years ago
- Collection of bioinformatics-related WDL modules and pipelines☆27Updated this week
- WDL tools for parsing, type-checking, and more☆28May 2, 2026Updated 4 months ago
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Sep 7, 2026Updated 2 weeks ago
- Calibrated clustering via knockoffs for single-cell genomics☆11Feb 13, 2025Updated last year
- Portable WDL workflows for IDseq production pipelines☆32Jan 19, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Lossless VCF compression☆22Mar 4, 2022Updated 4 years ago
- Workflow Description Language developer tools & local runner☆206Sep 5, 2026Updated 2 weeks ago
- Python client for GA4GH htsget protocol☆15Nov 7, 2022Updated 3 years ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17May 5, 2026Updated 4 months ago
- Parses and Plots Illumina SAV files☆13Jan 30, 2019Updated 7 years ago
- A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).☆212Updated this week
- Web-based User Interface to run WDL bioinformatics workflows using Cromwell server☆13Aug 28, 2024Updated 2 years ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆36May 28, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Warp Analysis Research Pipelines☆230Updated this week
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆81Mar 25, 2025Updated last year
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆11Nov 20, 2020Updated 5 years ago
- Accelerated genomics workflows in the Workflow Description Language☆38Apr 3, 2026Updated 5 months ago
- CWL experimental grammar☆11Nov 16, 2025Updated 10 months ago
- Pure Python MySQL Client☆11Jan 8, 2023Updated 3 years ago
- Educational materials for learning WDL☆129Mar 2, 2024Updated 2 years ago
- 把生物信息的一些常用资源整理成一个生信导航网页。☆22Sep 6, 2025Updated last year
- Specification for the Workflow Description Language (WDL).☆857Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆73Aug 22, 2026Updated 3 weeks ago
- CLI tool to manage the download of large quantities of files from DNAnexus☆19Updated this week
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Apr 25, 2023Updated 3 years ago
- A healthy human gut genome collection☆26Aug 21, 2025Updated last year
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 3 years ago
- Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.☆20Oct 25, 2020Updated 5 years ago
- ☆12Apr 17, 2024Updated 2 years ago