dnanexus / dxCompilerLinks
WDL and CWL compiler for the DNAnexus platform
☆34Updated last month
Alternatives and similar repositories for dxCompiler
Users that are interested in dxCompiler are comparing it to the libraries listed below
Sorting:
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- ☆9Updated 9 months ago
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆31Updated 4 months ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- A collection of reusable WDL tasks. Category:Other☆87Updated last week
- conda recipes for genomic data☆85Updated 4 years ago
- A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample☆26Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆39Updated 3 months ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- CLI for interacting with Cromwell servers☆55Updated last year
- Reference genome resource manager☆75Updated last year
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆79Updated 4 months ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆45Updated last year
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆34Updated this week
- An awk-like VCF parser☆56Updated last year
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆80Updated this week
- Workflow Description Language compiler for the DNAnexus platform☆41Updated 2 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- ☆30Updated 2 months ago
- Super small biological datasets for unit testing☆61Updated 5 years ago
- Create WDL documentation using Markdown.☆28Updated last month
- mtDNA Variant Caller☆34Updated 7 months ago
- WDL tools for parsing, type-checking, and more☆25Updated 3 months ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago