Alternatives and similar repositories for dxCompiler:

Users that are interested in dxCompiler are comparing it to the libraries listed below

• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆44Updated last year
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆46Updated last week
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆86Updated 2 weeks ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated 2 months ago
• openwdl / workflow-template-wdl
  ☆9Updated 6 months ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆29Updated 4 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• brentp / rare-disease-wf
  (WIP) best-practices workflow for rare disease
  ☆60Updated 9 months ago
• seppinho / mutserve
  mtDNA Variant Caller
  ☆34Updated 4 months ago
• chanzuckerberg / idseq-workflows
  Portable WDL workflows for IDseq production pipelines
  ☆31Updated 3 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆71Updated this week
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• stjude / CICERO
  CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
  ☆38Updated this week
• statgen / gotcloud
  Genomes on the Cloud, Mapping & Variant Calling Pipelines
  ☆34Updated 8 years ago
• refgenie / refgenie
  Reference genome resource manager
  ☆76Updated last year
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆39Updated 4 years ago
• deaconjs / ThousandVariantCallersRepo
  Thousand Variant Callers Project Repository
  ☆72Updated 5 years ago
• BD2KGenomics / toil-rnaseq
  UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline
  ☆40Updated 4 years ago
• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆56Updated 4 years ago
• ryanlayer / stix
  Structural Variant Index
  ☆72Updated 4 months ago
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆50Updated 4 years ago
• stjudecloud / wdldoc
  Create WDL documentation using Markdown.
  ☆27Updated 2 weeks ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago
• Illumina / GraphAlignmentViewer
  ☆35Updated 3 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆73Updated 2 weeks ago
• s-andrews / BamQC
  Mapped QC analysis program
  ☆44Updated 6 years ago
• Clinical-Genomics / stranger
  Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
  ☆32Updated last month
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆105Updated 4 years ago
• biowdl / germline-DNA
  A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
  ☆26Updated last year