dnanexus / dxCompilerLinks
WDL and CWL compiler for the DNAnexus platform
☆34Updated last week
Alternatives and similar repositories for dxCompiler
Users that are interested in dxCompiler are comparing it to the libraries listed below
Sorting:
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- Mutation Identification Pipeline. Read the latest documentation:☆45Updated last year
- A collection of reusable WDL tasks. Category:Other☆87Updated last week
- conda recipes for genomic data☆85Updated 3 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆49Updated 4 years ago
- ☆62Updated 8 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- CLI for interacting with Cromwell servers☆55Updated last year
- ☆69Updated this week
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆36Updated this week
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆69Updated 3 months ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- List of IARC bioinformatics nextflow pipelines☆51Updated 6 months ago
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆31Updated 3 months ago
- ☆9Updated 8 months ago
- Public repository for VariantValidator project☆76Updated last week
- Create WDL documentation using Markdown.☆27Updated 2 weeks ago
- Reference genome resource manager☆75Updated last year
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 5 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Galaxy RNA workbench☆40Updated 4 years ago
- Hail helper functions for the gnomAD project and Translational Genomics Group☆96Updated this week
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆80Updated last week
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- Simple vcf parser, based on PyVCF☆46Updated 6 years ago
- Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes☆63Updated 2 months ago