dnanexus / dxCompilerLinks
WDL and CWL compiler for the DNAnexus platform
☆34Updated 3 weeks ago
Alternatives and similar repositories for dxCompiler
Users that are interested in dxCompiler are comparing it to the libraries listed below
Sorting:
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample☆26Updated 2 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Reference genome resource manager☆74Updated last year
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆31Updated 7 months ago
- Public repository for VariantValidator project☆77Updated 2 weeks ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- CLI for interacting with Cromwell servers☆55Updated last year
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆70Updated 2 weeks ago
- ☆38Updated 8 months ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Thousand Variant Callers Project Repository☆73Updated 6 years ago
- Workflow Description Language compiler for the DNAnexus platform☆42Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Genomic VCF to tab-separated values☆47Updated 2 years ago
- Create WDL documentation using Markdown.☆28Updated last week
- Simple vcf parser, based on PyVCF☆47Updated 6 years ago
- A collection of reusable WDL tasks. Category:Other☆88Updated 2 months ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆38Updated last week
- GA4GH Variation Representation Python Implementation☆60Updated 2 weeks ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆54Updated 2 weeks ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆63Updated 6 months ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆63Updated 2 weeks ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- ☆63Updated 9 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- Extensible specification for representing and uniquely identifying biological sequence variation☆94Updated 3 weeks ago