lh3 / sgdp-fermi
FermiKit small variant calls for public SGDP samples
☆17Updated 8 years ago
Alternatives and similar repositories for sgdp-fermi:
Users that are interested in sgdp-fermi are comparing it to the libraries listed below
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Adapters for trimming☆30Updated 6 years ago
- ☆21Updated last month
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Updated 6 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Immuological gene typing and annotation for genome assembly☆31Updated 4 months ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- ☆20Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 8 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 9 months ago
- Tools to process LIANTI sequence data☆23Updated 6 years ago