lh3 / sgdp-fermiLinks
FermiKit small variant calls for public SGDP samples
☆17Updated 9 years ago
Alternatives and similar repositories for sgdp-fermi
Users that are interested in sgdp-fermi are comparing it to the libraries listed below
Sorting:
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Updated 2 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 4 months ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- ☆33Updated 3 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 11 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Updated 8 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago