Create WDL documentation using Markdown.
☆29Nov 25, 2025Updated 5 months ago
Alternatives and similar repositories for wdldoc
Users that are interested in wdldoc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FUSE filesystem for the DNAnexus storage system☆13Apr 24, 2026Updated last week
- Workflow Description Language developer tools & local runner☆202Apr 26, 2026Updated last week
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆43Apr 24, 2026Updated last week
- Vim syntax highlighting for WDL☆20Jul 28, 2021Updated 4 years ago
- A crate for working with genomics chain files.☆15Mar 19, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- WDL plugin for pytest☆48Aug 1, 2023Updated 2 years ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- A collection of reusable WDL tasks. Category:Other☆89Apr 8, 2026Updated 3 weeks ago
- Warp Analysis Research Pipelines☆225Updated this week
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- CLI for interacting with Cromwell servers☆54Apr 2, 2024Updated 2 years ago
- ☆12Sep 27, 2023Updated 2 years ago
- Educational materials for learning WDL☆130Mar 2, 2024Updated 2 years ago
- GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations☆23Apr 1, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- viral-ngs: complete pipelines☆74Apr 9, 2026Updated 3 weeks ago
- Rich IDE support for Workflow Description Language☆43Mar 28, 2025Updated last year
- Rust crates for working with Workflow Description Language (WDL) documents.☆62Sep 23, 2025Updated 7 months ago
- Cromwell/WDL wrapper for Python☆58Feb 13, 2026Updated 2 months ago
- Command line utility for working with next-generation sequencing files.☆38Jun 24, 2025Updated 10 months ago
- Specification for the Workflow Description Language (WDL).☆852Apr 24, 2026Updated last week
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Workflow Description Language compiler for the DNAnexus platform☆43Jun 29, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Aug 25, 2017Updated 8 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Sep 17, 2023Updated 2 years ago
- Configure workflow/pipeline tests using yaml files.☆69Aug 4, 2024Updated last year
- ☆32Aug 2, 2022Updated 3 years ago
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Apr 13, 2026Updated 2 weeks ago
- A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.☆14Aug 17, 2018Updated 7 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Feb 14, 2021Updated 5 years ago
- Web-based User Interface to run WDL bioinformatics workflows using Cromwell server☆13Aug 28, 2024Updated last year
- ☆17Jan 5, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Aug 1, 2021Updated 4 years ago
- GFA parser in Rust☆30May 26, 2023Updated 2 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- Command line utility for manipulating FASTQ files☆94Apr 14, 2026Updated 2 weeks ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- A repository for the schemas used for the Data Repository Service.☆63Mar 23, 2026Updated last month
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago