stjudecloud / wdldoc
Create WDL documentation using Markdown.
☆27Updated last week
Related projects ⓘ
Alternatives and complementary repositories for wdldoc
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆34Updated last week
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated 2 weeks ago
- ☆39Updated last month
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 3 weeks ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- TIDDIT - structural variant calling☆69Updated 3 months ago
- BigWig and BAM utilities☆92Updated 7 months ago
- Params validation plugin for Nextflow pipelines☆48Updated 3 months ago
- vembrane filters VCF records using python expressions☆57Updated last month
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆135Updated 5 months ago
- (WIP) best-practices workflow for rare disease☆58Updated 4 months ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- ☆9Updated 2 weeks ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆56Updated 3 weeks ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Structural Variant Prediction Viewer☆31Updated 7 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 5 months ago
- Pipeline for structural variation detection in cohorts☆48Updated 3 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated last month
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 8 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 2 months ago
- Version II of Mandalorion☆32Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- Splice junction analysis and filtering from BAM files☆38Updated 2 years ago