broadinstitute / wdltool
☆18Updated 7 years ago
Alternatives and similar repositories for wdltool:
Users that are interested in wdltool are comparing it to the libraries listed below
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Method for detecting STR expansions from short-read sequencing data☆62Updated 3 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 4 months ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 7 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Assembly Based ReAligner☆73Updated 6 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 9 months ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 8 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago