broadinstitute / wdltoolLinks
☆18Updated 7 years ago
Alternatives and similar repositories for wdltool
Users that are interested in wdltool are comparing it to the libraries listed below
Sorting:
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 6 months ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 9 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Vim syntax highlighting for WDL☆20Updated 3 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago