adamstruck / cwl2wdlLinks
Convert CWL to WDL
☆17Updated 8 years ago
Alternatives and similar repositories for cwl2wdl
Users that are interested in cwl2wdl are comparing it to the libraries listed below
Sorting:
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆14Updated 4 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 7 months ago
- conda recipes for genomic data☆85Updated 4 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…☆12Updated 10 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- ☆11Updated 8 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 7 months ago
- ☆37Updated 4 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆28Updated 3 weeks ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Workflows I find helpful for fungal genome annotation☆21Updated 2 years ago
- Malleable All-seeing Journal Of Research Artifacts☆36Updated 2 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- H3ABioNet 16S rDNA diverstity analysis package☆19Updated 6 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated last month
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- ☆18Updated 7 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆14Updated 5 years ago