common-workflow-lab / wdl2cwlLinks
[Experimental] Workflow Definition Language (WDL) to CWL
☆28Updated 3 years ago
Alternatives and similar repositories for wdl2cwl
Users that are interested in wdl2cwl are comparing it to the libraries listed below
Sorting:
- Convert CWL to WDL☆17Updated 8 years ago
- conda recipes for genomic data☆85Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 7 months ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- CWL for GDC DNASeq workflows☆22Updated last week
- ☆18Updated 7 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 7 months ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- H3ABioNet 16S rDNA diverstity analysis package☆19Updated 6 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆28Updated last month
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- ☆37Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated last month
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- ☆11Updated 8 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 6 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago