common-workflow-lab/wdl2cwl external links

---

GitHub - View repository

GitHub.dev - Open in online code editor

Star history - Growth chart over time

deps.dev - Dependencies and security vulnerabilities

Gitingest - Export source code for LLM usage

Repomix - Export source code for LLM usage

uithub - Export source code for LLM usage

Close

common-workflow-lab/wdl2cwl

Readme badge preview -

If you own this repo, copy the snippet below and add it to your README.md

---

Copy

[![RelatedRepos](https://img.shields.io/badge/related-repos-yellow)](https://relatedrepos.com/gh/common-workflow-lab/wdl2cwl)

Close

common-workflow-lab / wdl2cwlView on GitHubMore

• External links
• Readme badge

[Experimental] Workflow Definition Language (WDL) to CWL

☆28Nov 17, 2021Updated 4 years ago

Alternatives and similar repositories for wdl2cwl

Users that are interested in wdl2cwl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.

• adamstruck / cwl2wdl

  View on GitHub
  Convert CWL to WDL
  ☆17Oct 17, 2016Updated 9 years ago
• bmeg / funnel-client

  View on GitHub
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Feb 7, 2017Updated 9 years ago
• common-workflow-language / cwljava

  View on GitHub
  Java SDK for the Common Workflow Language standards
  ☆15Feb 23, 2026Updated last month
• common-workflow-library / legacy

  View on GitHub
  Deprecated
  ☆101Aug 12, 2019Updated 6 years ago
• broadinstitute / wdl-runner

  View on GitHub
  Easily run WDL workflows on GCP
  ☆14Sep 28, 2021Updated 4 years ago
• common-workflow-lab / python-cwlgen

  View on GitHub
  Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
  ☆30Jun 9, 2020Updated 5 years ago
• common-workflow-lab / cwl-ex

  View on GitHub
  CWL experimental grammar
  ☆11Nov 16, 2025Updated 4 months ago
• antonkulaga / cromwell-client

  View on GitHub
  Client for the Cromwell workflow engine
  ☆17Mar 7, 2024Updated 2 years ago
• ga4gh / task-execution-server

  View on GitHub
  ☆11Oct 21, 2016Updated 9 years ago
• dnanexus-archive / dx-cwl

  View on GitHub
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Sep 12, 2018Updated 7 years ago
• nextflow-io / cwl2nxf

  View on GitHub
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Aug 9, 2018Updated 7 years ago
• ga4gh / htsget

  View on GitHub
  Python client for GA4GH htsget protocol
  ☆15Nov 7, 2022Updated 3 years ago
• yuch7 / cwlexec

  View on GitHub
  A new open source tool to run CWL workflows on LSF
  ☆37Nov 24, 2022Updated 3 years ago
• DCGenomics / DangerTrack

  View on GitHub
  ☆13Jun 21, 2017Updated 8 years ago
• broadinstitute / wdltool

  View on GitHub
  ☆18Jan 24, 2018Updated 8 years ago
• common-workflow-lab / wdl-cwl-translator

  View on GitHub
  A translator from WDL to CWL v1.2
  ☆27Jan 19, 2026Updated 2 months ago
• biowdl / tasks

  View on GitHub
  A collection of reusable WDL tasks. Category:Other
  ☆88Mar 10, 2026Updated 2 weeks ago
• DataBiosphere / job-manager

  View on GitHub
  Job Manager API and UI for interacting with asynchronous batch jobs and workflows.
  ☆27Updated this week
• broadinstitute / firecloud-ui

  View on GitHub
  FireCloud user interface for web browsers.
  ☆19Aug 22, 2025Updated 7 months ago
• NLeSC / scriptcwl

  View on GitHub
  Create cwl workflows by writing a simple Python script
  ☆40Apr 29, 2020Updated 5 years ago
• brentp / excord

  View on GitHub
  extract SV signal from a BAM
  ☆11Jul 26, 2018Updated 7 years ago
• rabix / bunny

  View on GitHub
  [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
  ☆75Nov 18, 2020Updated 5 years ago
• ssadedin / ximmer

  View on GitHub
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Jan 28, 2026Updated last month
• dnanexus / dxWDL

  View on GitHub
  Workflow Description Language compiler for the DNAnexus platform
  ☆42Jun 29, 2023Updated 2 years ago
• lh3 / sdg

  View on GitHub
  EXPERIMENTAL implementation of side graph
  ☆10Apr 16, 2015Updated 10 years ago
• common-workflow-lab / gxargparse

  View on GitHub
  Automated CWL and Galaxy XML generation for Python tools that use argparse and click
  ☆11Jul 29, 2019Updated 6 years ago
• zeeev / mergeSVcallers

  View on GitHub
  heuristics to merge structural variant calls in VCF format.
  ☆38Oct 6, 2016Updated 9 years ago
• lskatz / lskScripts

  View on GitHub
  A placeholder for all my random scripts. Some scripts might eventually graduate and go to their own projects, so don't be surprised if a…
  ☆17Nov 24, 2025Updated 3 months ago
• dpastling / plethora

  View on GitHub
  Copy number estimation of highly duplicated sequences
  ☆10Aug 15, 2017Updated 8 years ago
• common-workflow-language / workflow-service

  View on GitHub
  Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
  ☆39Mar 10, 2026Updated 2 weeks ago
• bio-excel / bioexcel

  View on GitHub
  ☆13Mar 31, 2018Updated 7 years ago
• paulhager / smart-phase

  View on GitHub
  A comprehensive and intelligent clinical phasing tool
  ☆14Dec 3, 2022Updated 3 years ago
• COMBINE-lab / minnow

  View on GitHub
  ☆12Dec 1, 2021Updated 4 years ago
• blachlylab / mucor

  View on GitHub
  ☆12Feb 19, 2017Updated 9 years ago
• biobuilds / biobuilds

  View on GitHub
  Curated collection of open-source bioinformatics tools
  ☆28Feb 5, 2019Updated 7 years ago
• h3abionet / h3agatk

  View on GitHub
  ☆21Oct 24, 2020Updated 5 years ago
• BD2KGenomics / cgl-docker-lib

  View on GitHub
  ☆21Jul 3, 2019Updated 6 years ago
• yvdriess / precipes

  View on GitHub
  Parallel Recipes : parallel workflow execution made easy
  ☆13Sep 1, 2015Updated 10 years ago
• raphael-group / NAIBR

  View on GitHub
  Novel Adjacency Identification with Barcoded Reads
  ☆13Apr 19, 2022Updated 3 years ago