common-workflow-lab / wdl2cwl
[Experimental] Workflow Definition Language (WDL) to CWL
☆28Updated 3 years ago
Alternatives and similar repositories for wdl2cwl:
Users that are interested in wdl2cwl are comparing it to the libraries listed below
- Convert CWL to WDL☆17Updated 8 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- ☆18Updated 7 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆43Updated 5 years ago
- CWL tools and workflows for GGR☆21Updated 3 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 3 months ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- ☆29Updated 4 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated last year
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆28Updated 3 years ago
- H3ABioNet 16S rDNA diverstity analysis package☆18Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 7 months ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago
- WDL tools for parsing, type-checking, and more☆25Updated 7 months ago