sequencing / EAGLELinks
Enhanced Artificial Genome Engine: next generation sequencing reads simulator
☆33Updated 5 years ago
Alternatives and similar repositories for EAGLE
Users that are interested in EAGLE are comparing it to the libraries listed below
Sorting:
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- ☆37Updated 4 years ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Utilities to create and analyze gVCF files☆38Updated 8 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- a string to graph aligner☆41Updated 9 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆30Updated 7 years ago
- RUFUS k-mer based genomic variant detection☆54Updated 7 months ago