sequencing / EAGLE
Enhanced Artificial Genome Engine: next generation sequencing reads simulator
☆32Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for EAGLE
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- ☆28Updated last year
- Small general purpose library for C and Python with focus on bioinformatics.☆29Updated 2 years ago
- tools for error correction and working with long read data☆44Updated 9 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- Graphite - Graph-based variant adjudication☆28Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆54Updated 7 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Updated 5 years ago
- 10x Genomics Reads Simulator☆45Updated 10 months ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆55Updated 7 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Method for detecting STR expansions from short-read sequencing data☆62Updated 2 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆32Updated 5 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Graph based multi genome aligner☆46Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 5 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆41Updated 5 years ago
- Structural Variant Prediction Viewer☆31Updated 7 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 5 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆29Updated last year