Accelerated genomics workflows in the Workflow Description Language
☆35Jan 21, 2026Updated last month
Alternatives and similar repositories for Parabricks-WDL-Workflows
Users that are interested in Parabricks-WDL-Workflows are comparing it to the libraries listed below
Sorting:
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Benchmarking variant calling in polyploids☆15Nov 26, 2021Updated 4 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Mar 10, 2018Updated 7 years ago
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- Accelerated genomics workflows in NextFlow☆42Sep 11, 2024Updated last year
- Lossless VCF compression☆21Mar 4, 2022Updated 3 years ago
- ☆33Aug 2, 2022Updated 3 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆17Feb 11, 2025Updated last year
- Align subreads to ccs reads☆14Jun 11, 2025Updated 8 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Jan 9, 2026Updated last month
- WDL tools for parsing, type-checking, and more☆28Sep 2, 2025Updated 5 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated last year
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 8 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Sep 2, 2025Updated 5 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated last month
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 4 years ago
- Plot CNV data with a genome viewer in R☆15Apr 5, 2017Updated 8 years ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.☆78Feb 28, 2023Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 5 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Sep 19, 2022Updated 3 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 7 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Dec 6, 2023Updated 2 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆176Apr 12, 2024Updated last year
- Phased structural variant discovery in pangenomes☆39Dec 9, 2025Updated 2 months ago
- Rapid and accurate ancestry inference using SNVs.☆28Aug 15, 2025Updated 6 months ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆21Jan 4, 2026Updated last month
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month