A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.
☆18Aug 10, 2026Updated this week
Alternatives and similar repositories for annsel
Users that are interested in annsel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast array utilities☆15Updated this week
- ☆18May 15, 2026Updated 2 months ago
- High-Performance Sparse Matrix Library☆19Nov 23, 2025Updated 8 months ago
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Implementation of Zarr file format in Rust☆30Updated this week
- Automatically annotate cell types, consistently across samples.☆27Updated this week
- Sparse Tensor Programming in Python powered by Finch.jl☆25Updated this week
- Facilitating the use of Deep Visual Proteomics☆17Jan 16, 2026Updated 6 months ago
- Multimodal Data (.h5mu) implementation for Python☆130Updated this week
- A CodecPipeline for zarr-python backed by the zarrs Rust crate☆78Updated this week
- Single-cell differential expression☆19Apr 23, 2026Updated 3 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆71Updated this week
- ☆17Aug 3, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆32Jul 30, 2026Updated 2 weeks ago
- Illico is a python library performing fast and lightweight wilcoxon rank-sum tests for single-cell RNASeq.☆21Jul 30, 2026Updated 2 weeks ago
- Build contrasts for models defined with formulaic☆13Updated this week
- ☆51Jul 22, 2026Updated 3 weeks ago
- Mini App Farcaster☆15Oct 9, 2025Updated 10 months ago
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated last month
- 💪🏿🤖 (ARENA.AI <> CLAUDE OPUS 4.6)☆14Mar 13, 2026Updated 5 months ago
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated 3 weeks ago
- ☆38Jul 31, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Query Zarr stores with SQL directly from DuckDB☆41Aug 4, 2026Updated last week
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆68Updated this week
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Sep 2, 2024Updated last year
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆79Updated this week
- A Polars plugin for encrypting and decrypting data using AES-GSM-CIV algorithm in Rust☆11Jan 8, 2025Updated last year
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Flow & mass cytometry analytics.☆61Updated this week
- Multi-Dimensional Visualization (MDV) is an open-source toolkit for analyzing and visualizing spatial and molecular datasets. Code licens…☆38Updated this week
- Data-driven signal detection for unbiased scRNA-seq data analysis☆24Jan 22, 2026Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Single-cell spatial omics analysis that makes you happy!☆70Updated this week
- Read-only JavaScript/TypeScript reader for Icechunk repositories, designed for use with zarrita.☆21Jun 24, 2026Updated last month
- MirMachine, a command line tool to detect microRNA homologs in genome sequences.☆15Updated this week
- A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless …☆22Aug 3, 2026Updated last week
- Dataloader for common proteomics search engine outputs into AnnData format☆14Mar 25, 2026Updated 4 months ago
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated 4 months ago
- A simple and performant native R reader & writer for Zarr Arrays☆54Updated this week