Alternatives and similar repositories for annsel

Users that are interested in annsel are comparing it to the libraries listed below

• bioFAM / mofaflex
  factor models for omics data
  ☆20Updated this week
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆13Updated this week
• funkyheatmap / funkyheatmappy
  Visualising data frames as funky heatmaps 📊, the Python implementation
  ☆22Updated 8 months ago
• laminlabs / nbproject
  Light-weight Jupyter notebook tracker.
  ☆34Updated 5 months ago
• VeraPancaldiLab / tysserand
  Fast reconstruction of spatial networks from bioimages.
  ☆25Updated 6 months ago
• scverse / shadows
  Shadow objects for AnnData and MuData (experimental)
  ☆11Updated 7 months ago
• quadbio / cell-annotator
  Automatically annotate cell types, consistently across samples.
  ☆16Updated 2 months ago
• theislab / geome
  ☆15Updated 2 months ago
• laminlabs / bionty
  Access & manage biological ontologies.
  ☆20Updated last week
• metaspace2020 / metaspace-converter
  Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
  ☆11Updated last year
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆38Updated last month
• scverse / spatialdata-plot
  Static plotting for spatialdata
  ☆68Updated this week
• saeyslab / FlowSOM_Python
  The complete FlowSOM package known from R, now available in Python!
  ☆23Updated last week
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆20Updated 2 years ago
• Genentech / SIGnature
  SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …
  ☆22Updated 3 months ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆29Updated last week
• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆33Updated this week
• MICS-Lab / scyan
  Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…
  ☆37Updated 11 months ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated 3 weeks ago
• cytomining / CytoTable
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆16Updated this week
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆21Updated 7 months ago
• OzetteTech / comparative-embedding-visualization
  A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.
  ☆47Updated 11 months ago
• davisidarta / topometry
  Systematically learn and evaluate manifolds from high-dimensional data
  ☆102Updated last week
• buettnerlab / convexgating
  Optimal gating strategies for flow and mass cytometry.
  ☆15Updated 6 months ago
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆56Updated this week
• jupyter-widgets-contrib / ipyigv
  A Jupyter wrapper for the igv.js library (representation of genomic data)
  ☆26Updated 4 years ago
• spatial-image / spatial-image
  A multi-dimensional spatial image data structure for scientific Python.
  ☆43Updated 2 months ago
• zarrs / zarrs-python
  A CodecPipeline for zarr-python backed by the zarrs Rust crate
  ☆56Updated this week
• manzt / scipy-2024-anywidget
  ☆25Updated last year