cbg-ethz / dce
Finding the causality in biological pathways
☆13Updated last year
Alternatives and similar repositories for dce:
Users that are interested in dce are comparing it to the libraries listed below
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated last month
- Single Cell Consensus Clustering with Speed☆21Updated 2 years ago
- PROGENY Python implementation☆12Updated 3 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- Map single-cell transcriptomes to copy number evolutionary trees.☆13Updated 8 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 7 months ago
- ☆25Updated 3 months ago
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…☆22Updated 3 weeks ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆23Updated 3 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated 2 months ago
- Gene Expression Decomposition and Integration☆18Updated 2 months ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- ☆24Updated 3 months ago
- ☆26Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- RNA velocity validation☆22Updated 3 years ago
- Code, data and analysis for moslin.☆12Updated 6 months ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Molecular interactions inference from single-cell multi-omics data☆24Updated 5 months ago
- Code and example of the D-SPIN framework☆21Updated this week
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 5 months ago
- Information-based dimensionality reduction☆29Updated 4 months ago
- Summary statistics for repertoires☆16Updated 2 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 3 months ago
- Using BCR and expression for sequence embedding☆21Updated last week
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 4 years ago