Alternatives and similar repositories for dce

Users that are interested in dce are comparing it to the libraries listed below

• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆36Updated last month
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆20Updated 2 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• shmohammadi86 / SCINET
  ☆19Updated 4 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• saezlab / progeny-py
  PROGENY Python implementation
  ☆12Updated 3 years ago
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆44Updated last month
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆22Updated 3 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 5 years ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 3 years ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆34Updated 7 months ago
• const-ae / transformGamPoi-Paper
  ☆28Updated 2 years ago
• pqiu / cooccurrence_clustering
  ☆14Updated 5 years ago
• cailab-tamu / scTenifoldNet
  A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
  ☆24Updated 10 months ago
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆24Updated 2 weeks ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated last year
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆19Updated 9 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆28Updated 10 months ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆56Updated 2 years ago
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆21Updated 8 months ago
• lingfeiwang / normalisr
  Causal inference, differential expression, and co-expression for scRNA-seq
  ☆18Updated 4 years ago
• yanailab / enhance
  ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
  ☆14Updated 6 years ago
• xinhe-lab / GSFA
  R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …
  ☆22Updated 2 years ago
• canzarlab / JVis-learn
  ☆20Updated 4 years ago
• HCA-integration / scAtlasTb
  Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases
  ☆41Updated last week
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆43Updated 2 years ago
• cbg-ethz / SCATrEx
  Map single-cell transcriptomes to copy number evolutionary trees.
  ☆14Updated last year
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆23Updated 4 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago