cbg-ethz / scDEF
Deep exponential families for single-cell data.
☆20Updated last week
Related projects ⓘ
Alternatives and complementary repositories for scDEF
- Map single-cell transcriptomes to copy number evolutionary trees.☆13Updated 3 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆19Updated this week
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated 2 months ago
- A python package for chromVAR☆27Updated last year
- Dynamical systems methods for RNA velocity analysis☆23Updated 3 years ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆20Updated 11 months ago
- scVI extension for unspliced RNA☆16Updated 3 weeks ago
- Code for scKINETICS (ISMB 2023)☆20Updated last year
- Single-cell Iso Prep☆12Updated last year
- ☆23Updated last month
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆14Updated 5 months ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- A method for analyzing scATAC-seq experiments.☆23Updated last month
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆19Updated 4 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆41Updated 2 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆50Updated 3 weeks ago
- High-definition modeling of chromatin + transcriptomics data☆18Updated 2 weeks ago
- Regulatory networks with Direct Information in python☆38Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆45Updated 4 months ago
- ☆23Updated 2 months ago
- Dorothea package in Python☆11Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 2 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 3 weeks ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆33Updated last year
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 3 years ago
- Multi-resolution Variational Inference☆22Updated last month
- Test genes for Spatial Variation☆12Updated last year
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Python package to perform normalization and variance-stabilization of single-cell data☆23Updated 2 years ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆47Updated 4 months ago