cbg-ethz / scDEF
Deep exponential families for single-cell data.
☆21Updated 4 months ago
Alternatives and similar repositories for scDEF:
Users that are interested in scDEF are comparing it to the libraries listed below
- Map single-cell transcriptomes to copy number evolutionary trees.☆13Updated 7 months ago
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated this week
- Distributed single-cell data analysis.☆29Updated this week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆21Updated this week
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆19Updated 8 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆51Updated 2 weeks ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆23Updated 2 months ago
- A python package for chromVAR☆27Updated last year
- Single-cell Iso Prep☆15Updated last year
- A toolking for cell type hierarchies: marker selection & consistent classification☆21Updated last year
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated 2 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆29Updated 6 months ago
- A method for analyzing scATAC-seq experiments.☆27Updated 2 weeks ago
- scVI extension for unspliced RNA☆16Updated 2 months ago
- Test genes for Spatial Variation☆14Updated 3 months ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Updated last year
- Dorothea package in Python☆11Updated 2 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- Identification of spatial homogeneous regions☆20Updated 2 months ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 6 months ago
- Global Waddington-OT☆23Updated 7 months ago
- ☆21Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆26Updated 3 years ago
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year