cbg-ethz / scDEFLinks
Deep exponential families for single-cell data.
☆20Updated this week
Alternatives and similar repositories for scDEF
Users that are interested in scDEF are comparing it to the libraries listed below
Sorting:
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 3 months ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Updated 2 years ago
- Distributed single-cell data analysis.☆35Updated last month
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆27Updated last year
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆97Updated last month
- A python package for chromVAR☆32Updated 2 years ago
- Registry for scverse ecosystem packages☆32Updated 2 weeks ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- ☆22Updated 3 years ago
- Multimodal Data (.h5mu) implementation for Python☆105Updated last month
- A method for analyzing scATAC-seq experiments.☆34Updated 6 months ago
- Dorothea package in Python☆11Updated 3 years ago
- Map single-cell transcriptomes to copy number evolutionary trees.☆14Updated last year
- ☆13Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆65Updated this week
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆33Updated last month
- MultiMAP for integration of single cell multi-omics☆55Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆51Updated 11 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Updated 2 years ago
- This repository hosts a minimal version of a Python API for BPNet.☆53Updated 2 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Updated 9 months ago
- Python client for the OmniPath web service☆56Updated 6 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆28Updated 4 years ago
- Multi-omics factor analysis v2☆55Updated last week
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Non-parametric density inference for single-cell analysis.☆74Updated 7 months ago