cbg-ethz / scDEFLinks
Deep exponential families for single-cell data.
☆20Updated last week
Alternatives and similar repositories for scDEF
Users that are interested in scDEF are comparing it to the libraries listed below
Sorting:
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 2 months ago
- Distributed single-cell data analysis.☆35Updated 2 weeks ago
- A python package for chromVAR☆32Updated 2 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆96Updated 2 weeks ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆27Updated 11 months ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Updated 2 years ago
- Dorothea package in Python☆11Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- MultiMAP for integration of single cell multi-omics☆55Updated 2 years ago
- Registry for scverse ecosystem packages☆31Updated this week
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆51Updated 11 months ago
- Map single-cell transcriptomes to copy number evolutionary trees.☆14Updated last year
- ☆22Updated 3 years ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Updated 2 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆64Updated 2 weeks ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- A method for analyzing scATAC-seq experiments.☆34Updated 6 months ago
- Recurrent Variational Auto gene encoder☆20Updated 2 years ago
- Geometry-preserving random sampling☆95Updated last year
- Code for scKINETICS (ISMB 2023)☆22Updated 2 years ago
- ☆48Updated last week
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- a dataloader to work with large single cell datasets from lamindb☆32Updated last week
- Population balance analysis☆44Updated 6 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Updated 8 months ago
- Multimodal Data (.h5mu) implementation for Python☆104Updated 2 weeks ago
- Test genes for Spatial Variation☆15Updated last year
- Benchmark of GRNs using the GRETA pipeline☆30Updated last week