Deep exponential families for single-cell data.
☆22Aug 17, 2026Updated 2 months ago
Alternatives and similar repositories for scDEF
Users that are interested in scDEF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Map single-cell transcriptomes to copy number evolutionary trees.☆14Aug 18, 2024Updated 2 years ago
- LongSom tool for long-reads☆13May 20, 2025Updated last year
- Single-cell Iso Prep☆16Oct 28, 2023Updated 3 years ago
- Inference in Bayesian Networks with R☆12Feb 6, 2023Updated 3 years ago
- A deme-based, spatially explicit model of intra-tumour population genetics☆21Jan 28, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆22Jun 9, 2025Updated last year
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆23Jul 11, 2024Updated 2 years ago
- Single-cell copy number calling and event history reconstruction.☆29Sep 3, 2026Updated last month
- ☆13Jul 16, 2026Updated 3 months ago
- A cheap mesoscopic light sheet and optical projection tomography microscope☆14Mar 20, 2023Updated 3 years ago
- The uncompromising Jupyter notebook formatter.☆14Jan 26, 2024Updated 2 years ago
- SpotSweeper-py: Python version of SpotSweeper package☆11Sep 6, 2026Updated last month
- ☆17Feb 16, 2024Updated 2 years ago
- Collection of Sphinx extensions similar to (but more flexible than) numpydoc☆12Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- Analysis framework for morphological profiling data☆14Updated this week
- ☆12Apr 9, 2022Updated 4 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 9 months ago
- VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data☆24Oct 21, 2025Updated last year
- Repository for the clone2vec python package☆26Sep 8, 2026Updated last month
- Robust and scalable single-cell signature scoring☆29Updated this week
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆36Nov 4, 2023Updated 2 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆40Sep 2, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆98Updated this week
- Simple template for running snakemake with R☆13Jan 31, 2023Updated 3 years ago
- Code for pmVAE model, seen in ICML CompBio '21☆12Apr 12, 2024Updated 2 years ago
- Julia package to fit and analyze stochastic gene transcription models☆10Updated this week
- Harmony framework for connecting scRNA-seq data from discrete time points☆54Dec 1, 2025Updated 11 months ago
- Method based on neural networks and variational inference for causal discovery under latent interventions, i. e. learning a shared causal…☆21Feb 23, 2022Updated 4 years ago
- ☆25Mar 3, 2020Updated 6 years ago
- ☆19Aug 25, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆20Dec 5, 2024Updated last year
- Scripts to help get fastqs☆20May 13, 2026Updated 5 months ago
- Tutorial: Writing R and Python Packages with Multithreaded C++ Code using BLAS, AVX2/AVX512, OpenMP, C++11 Threads and Cuda GPU accelerat…☆13Nov 27, 2022Updated 3 years ago
- Seamlessly integrate R packages into Python.☆21Apr 12, 2023Updated 3 years ago
- Tutorials for learning scverse☆23Updated this week
- Musculoskeletal Analysis extension for 3D Slicer. Currently has cortical, cancellous, and bone density analysis.☆13May 2, 2024Updated 2 years ago