pachterlab / MCML
☆33Updated 3 years ago
Alternatives and similar repositories for MCML:
Users that are interested in MCML are comparing it to the libraries listed below
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated last month
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated 9 months ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- Diverse sampling for single-cell datasets☆16Updated 4 years ago
- Fit generalized linear models in python.☆27Updated 2 years ago
- Full annotation using shape-constrained trees☆25Updated last year
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- ☆27Updated last year
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆15Updated 5 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- ☆21Updated last year
- Seamlessly integrate R packages into Python.☆21Updated 2 years ago
- University of Cambridge PhD thesis☆15Updated 4 years ago
- ☆19Updated 7 years ago
- ☆28Updated 2 years ago
- ☆16Updated 4 months ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Perturb-seq analysis package☆14Updated last year
- Accompanying repository for GkmExplain paper☆22Updated 4 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Core pipeline of GenoML☆15Updated 4 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.☆20Updated 4 years ago
- The official Inferelator repository maintained by current or former Bonneau lab members☆9Updated 7 years ago
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago