pachterlab / MCMLLinks
☆33Updated 4 years ago
Alternatives and similar repositories for MCML
Users that are interested in MCML are comparing it to the libraries listed below
Sorting:
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated last year
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- A Python package for gene network analysis☆32Updated 3 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 2 months ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Modelling DNA methylation profiles☆23Updated 5 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- GWAS gold standards repository☆38Updated last year
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Accompanying repository for GkmExplain paper☆23Updated 5 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- ☆16Updated 8 months ago
- Bioinformatics for Benched Biologists☆22Updated 5 years ago
- ☆21Updated 8 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Updated 6 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆11Updated 6 years ago
- Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.☆20Updated 4 years ago
- Genetics training camp☆21Updated 5 years ago
- Full annotation using shape-constrained trees☆26Updated 2 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- ☆23Updated 8 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Computational Biology- Spring 2021☆48Updated 3 years ago
- Core functionality of the CGAT code☆33Updated 3 weeks ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆34Updated 6 months ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- HiDeF (Hierarchical community Decoding Framework)☆15Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- ☆12Updated 6 years ago