pachterlab / MCMLLinks
☆33Updated 4 years ago
Alternatives and similar repositories for MCML
Users that are interested in MCML are comparing it to the libraries listed below
Sorting:
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated last week
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- An interface for Nested Stochastic Block Model for single cell analysis☆37Updated last week
- Accompanying repository for GkmExplain paper☆23Updated 5 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Modelling DNA methylation profiles☆23Updated 5 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- GWAS gold standards repository☆38Updated last year
- Full annotation using shape-constrained trees☆26Updated 2 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- ☆16Updated 9 months ago
- ☆12Updated 6 years ago
- ☆29Updated 2 years ago
- ☆24Updated 7 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆11Updated 6 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- ☆23Updated 8 months ago
- ☆28Updated 2 years ago
- Single cell network synthesis toolkit☆23Updated 4 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- ☆21Updated 8 years ago
- Computational Biology- Spring 2021☆48Updated 3 years ago
- GPU implementation of ARD NMF☆44Updated 2 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 5 years ago