Alternatives and similar repositories for MCML:

Users that are interested in MCML are comparing it to the libraries listed below

• theislab / batchglm
  Fit generalized linear models in python.
  ☆27Updated last year
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆32Updated this week
• czbiohub-sf / molecular-cross-validation
  Calibrate and compare methods for denoising single-cell RNA-seq data
  ☆2Updated 4 years ago
• czbiohub-sf / simscity
  A library to simulate single-cell data
  ☆2Updated last year
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆21Updated 3 months ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆39Updated 6 years ago
• fabilab / northstar
  Single cell type annotation guided by cell atlases, with freedom to be queer
  ☆25Updated 2 years ago
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 6 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆40Updated 2 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• RGLab / FAUST
  Full annotation using shape-constrained trees
  ☆25Updated last year
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 2 years ago
• Teichlab / GPfates
  ☆19Updated 7 years ago
• bioFAM / slalom
  ☆28Updated 2 years ago
• bendemeo / hopper
  Diverse sampling for single-cell datasets
  ☆16Updated 4 years ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆20Updated last week
• andreaskapou / scMET
  Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
  ☆20Updated last year
• COMBINE-lab / pyroe
  ☆16Updated last month
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆55Updated last year
• rargelaguet / thesis
  University of Cambridge PhD thesis
  ☆15Updated 4 years ago
• kundajelab / gkmexplain
  Accompanying repository for GkmExplain paper
  ☆22Updated 4 years ago
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 3 months ago
• const-ae / transformGamPoi-Paper
  ☆26Updated last year
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated 7 months ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆35Updated 5 years ago
• simslab / scHPF
  Single-cell Hierarchical Poisson Factorization
  ☆67Updated 2 years ago
• swoodhouse / SCNS-Toolkit
  Single cell network synthesis toolkit
  ☆23Updated 4 years ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆40Updated 4 months ago
• YosefLab / FastProject
  Dimensionality reduction for single cell RNA-seq data
  ☆35Updated 5 years ago