☆34Aug 24, 2021Updated 5 years ago
Alternatives and similar repositories for MCML
Users that are interested in MCML are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆72Sep 30, 2025Updated 11 months ago
- ☆16Nov 5, 2021Updated 4 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆39Aug 18, 2026Updated last week
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Feb 14, 2021Updated 5 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago
- Bulk and single-cell Multi-Omics ground truth Simulator in R☆12Feb 10, 2026Updated 6 months ago
- Navigation links (and brief descriptions) to my repositories.☆14Nov 25, 2025Updated 9 months ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 5 months ago
- ☆27Sep 26, 2024Updated last year
- ☆12Jun 10, 2024Updated 2 years ago
- Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".☆14Nov 20, 2020Updated 5 years ago
- Pipeline to detect HLA disruption from WES and RNAseq data☆23Feb 17, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- ☆13Nov 13, 2018Updated 7 years ago
- ☆21Mar 2, 2026Updated 5 months ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Course material for CSAMA 2015: Statistics and Computing in Genome Data Science☆11Mar 15, 2023Updated 3 years ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22May 27, 2022Updated 4 years ago
- Conditional Autoencoders for Multiplexed Pixel Analysis☆19Nov 25, 2022Updated 3 years ago
- Python code for genetic marker selection using linear programming☆43Mar 22, 2024Updated 2 years ago
- RA Synovial Single-cell Multimodal Cell Atlas☆22Mar 6, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package for robust clustering of single cell RNA sequencing data☆38Mar 25, 2024Updated 2 years ago
- Perform inference on algorithm-agnostic variable importance in Python☆21May 12, 2022Updated 4 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Jun 10, 2021Updated 5 years ago
- Genomics data re-analysis☆24Updated this week
- filtering SNPs based on LD and HWE status☆10Jul 3, 2023Updated 3 years ago
- A multiscale pangenome browser☆35Jul 18, 2026Updated last month
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 5 years ago
- A template for Python projects using cookiecutter☆14Aug 24, 2026Updated last week
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Keep Me Around: Intron Retention Detection☆30Jan 30, 2019Updated 7 years ago
- Store collections of experimental data based on TileDB☆11Updated this week
- Fast Laplacian estimation☆17May 31, 2024Updated 2 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆13Oct 23, 2024Updated last year
- Package for pooling the results from (dependent) tests☆12Dec 1, 2025Updated 8 months ago
- AnnData interoperability in R☆195Updated this week
- Documentation for PEP specification and all PEPkit software☆10Updated this week