pachterlab / MCMLLinks
☆33Updated 4 years ago
Alternatives and similar repositories for MCML
Users that are interested in MCML are comparing it to the libraries listed below
Sorting:
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆71Updated 3 months ago
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 3 months ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Updated 2 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 5 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- ☆29Updated 2 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Modelling DNA methylation profiles☆24Updated 5 years ago
- GWAS gold standards repository☆39Updated 2 years ago
- Single-cell Hierarchical Poisson Factorization☆74Updated 3 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Full annotation using shape-constrained trees☆28Updated 2 years ago
- Bioinformatics for Benched Biologists☆22Updated 5 years ago
- Accompanying repository for GkmExplain paper☆23Updated 5 years ago
- Computational Biology- Spring 2021☆48Updated 4 years ago
- ☆16Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- scRNAseq integration with triplet neural networks☆41Updated 3 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆106Updated 2 years ago
- Core functionality of the CGAT code☆34Updated 4 months ago
- ☆21Updated 8 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆45Updated last year
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 7 years ago
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆36Updated 5 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- ☆23Updated last year
- Diverse sampling for single-cell datasets☆16Updated 5 years ago