astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨
β56Jun 23, 2026Updated last month
Alternatives and similar repositories for astir
Users that are interested in astir are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information β¦β41May 7, 2024Updated 2 years ago
- β71Jan 18, 2023Updated 3 years ago
- Minimum Information about Tissue Imagingβ21Oct 18, 2023Updated 2 years ago
- Segmentation error aware clustering for multiplexed imagingβ19Jan 9, 2025Updated last year
- Spatial analysis toolkit for single cell multiplexed tissue dataβ30Sep 2, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- β19Apr 5, 2024Updated 2 years ago
- β38Dec 13, 2023Updated 2 years ago
- Optimal gating strategies for flow and mass cytometry.β16Jul 22, 2026Updated last week
- Multiple-choice microscopy pipelineβ155Jun 16, 2026Updated last month
- R package for visualization of highly multiplexed imaging dataβ36Jun 9, 2026Updated last month
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Dataβ12Dec 3, 2022Updated 3 years ago
- Spatial Single-Cell Analysis Toolkitβ113Mar 11, 2026Updated 4 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct featuresβ24Jan 9, 2026Updated 6 months ago
- β19Mar 15, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A package for the analysis of Imaging Mass Cytometry dataβ16Mar 25, 2026Updated 4 months ago
- β20Apr 8, 2025Updated last year
- Framework for image and flow cytometry analysisβ33Mar 17, 2026Updated 4 months ago
- Deep Learning Library for Spot Detectionβ24Jun 4, 2026Updated last month
- Microscopy Image Cytometry Toolkitβ116Jul 15, 2022Updated 4 years ago
- β23Mar 22, 2023Updated 3 years ago
- Discovering novel cell types across heterogenous single-cell experimentsβ124Dec 8, 2022Updated 3 years ago
- Histology Topography Cytometry Analysis Toolboxβ69Mar 23, 2026Updated 4 months ago
- Imaging Mass Cytometry (IMC) file type support for napariβ13Jul 8, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A pixel classification based multiplexed image segmentation pipelineβ107Dec 5, 2023Updated 2 years ago
- A performant scientific image visualization system.β36Updated this week
- β27Oct 12, 2024Updated last year
- An interface for Nested Stochastic Block Model for single cell analysisβ38Jul 9, 2026Updated 2 weeks ago
- A toolkit for processing multiplexed tissue imagesβ69Jul 13, 2026Updated 2 weeks ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCβ¦β289Jul 15, 2026Updated 2 weeks ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.β19Jun 9, 2025Updated last year
- Fast reconstruction of spatial networks from bioimages.β26Mar 27, 2026Updated 4 months ago
- Computer simulator of multiplex tissue images from a set of user-defined parametersβ10Dec 13, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- β27Oct 23, 2025Updated 9 months ago
- Bayesian Segmentation of Spatial Transcriptomics Dataβ208Jun 26, 2026Updated last month
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression dataβ23Apr 19, 2021Updated 5 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communicationsβ68Mar 14, 2024Updated 2 years ago
- multimodal whole slide image registration in a graph structureβ103Jul 4, 2024Updated 2 years ago
- overview of spatial datasetsβ80Feb 19, 2024Updated 2 years ago
- Clone identification from single-cell dataβ65Nov 10, 2022Updated 3 years ago