camlab-bioml / astirLinks
astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨
β53Updated 2 weeks ago
Alternatives and similar repositories for astir
Users that are interested in astir are comparing it to the libraries listed below
Sorting:
- A Python toolkit for subcellular analysis of spatial transcriptomics dataβ80Updated 3 weeks ago
- β54Updated this week
- Spatial Single-Cell Analysis Toolkitβ92Updated last week
- β27Updated 9 months ago
- β26Updated 5 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct featuresβ22Updated last year
- Spatial analysis toolkit for single cell multiplexed tissue dataβ30Updated 10 months ago
- β63Updated last week
- β53Updated last year
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentationβ47Updated 3 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.β27Updated 9 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.β38Updated 2 years ago
- Test genes for Spatial Variationβ14Updated 6 months ago
- β36Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mappingβ81Updated last year
- MERFISH decoding softwareβ26Updated 2 years ago
- Analyzing cellular niches in spatial transcriptomics dataβ29Updated 7 months ago
- β67Updated 2 years ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive fβ¦β64Updated 8 months ago
- β19Updated 5 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.β38Updated this week
- β56Updated 7 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many otheβ¦β51Updated last week
- CAST packageβ40Updated 8 months ago
- A toolkit for processing multiplexed tissue imagesβ61Updated 2 weeks ago
- spatial transcriptome, single cellβ68Updated 2 years ago
- β45Updated 2 years ago
- β52Updated 4 years ago
- ClusterMap for multi-scale clustering analysis of spatial gene expressionβ45Updated last month
- Interoperability between SpatialData and the Xenium Explorerβ23Updated 11 months ago