camlab-bioml / astirLinks
astir | Automated cell identity from single-cell multiplexed imaging and proteomics š„š¬āØ
ā53Updated last month
Alternatives and similar repositories for astir
Users that are interested in astir are comparing it to the libraries listed below
Sorting:
- ā27Updated 10 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics dataā80Updated last week
- ā26Updated 5 years ago
- ā54Updated last week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.ā38Updated 2 years ago
- Spatial Single-Cell Analysis Toolkitā94Updated last month
- ā38Updated last year
- ā65Updated last week
- Spatial analysis toolkit for single cell multiplexed tissue dataā30Updated 11 months ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentationā48Updated 3 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct featuresā22Updated last year
- MERFISH decoding softwareā26Updated 2 years ago
- Test genes for Spatial Variationā14Updated 7 months ago
- CAST packageā40Updated 9 months ago
- A toolkit for processing multiplexed tissue imagesā62Updated 2 weeks ago
- Spatial direct messaging detected by bivariate Moranā27Updated 2 weeks ago
- Interoperability between SpatialData and the Xenium Explorerā24Updated last year
- ā55Updated last year
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.ā27Updated 10 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.ā39Updated 3 weeks ago
- Identification of spatial homogeneous regionsā21Updated 6 months ago
- Histology Topography Cytometry Analysis Toolboxā67Updated last year
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in cā¦ā14Updated 3 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2ā37Updated 5 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information ā¦ā36Updated last year
- spatial transcriptome, single cellā68Updated 2 years ago
- ā52Updated 4 years ago
- ā67Updated 2 years ago
- Analyzing cellular niches in spatial transcriptomics dataā30Updated 8 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mappingā82Updated last year