camlab-bioml / astir
astir | Automated cell identity from single-cell multiplexed imaging and proteomics š„š¬āØ
ā52Updated 10 months ago
Alternatives and similar repositories for astir:
Users that are interested in astir are comparing it to the libraries listed below
- Spatial Single-Cell Analysis Toolkitā89Updated 2 weeks ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.ā27Updated 6 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.ā37Updated last year
- ā25Updated 6 months ago
- ā25Updated 5 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics dataā77Updated last week
- MARIO: single-cell proteomic data matching and integration using both shared and distinct featuresā23Updated last year
- ā28Updated 5 months ago
- ā50Updated 10 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information ā¦ā34Updated 11 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomicsā68Updated 2 weeks ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.ā113Updated last week
- ā19Updated 5 years ago
- Segmentation error aware clustering for multiplexed imagingā17Updated 3 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in cā¦ā14Updated 3 years ago
- Single-cell spatial proteomics analysis that makes you happy!ā25Updated this week
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentationā45Updated 2 years ago
- Interoperability between SpatialData and the Xenium Explorerā21Updated 8 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mappingā77Updated last year
- ā31Updated 2 months ago
- ā34Updated last year
- Image Mass Cytometry analysis pipelineā25Updated 2 months ago
- Single-cell exploratory data analysis for RNA-Seqā40Updated 3 years ago
- Analyzing cellular niches in spatial transcriptomics dataā29Updated 4 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive fā¦ā57Updated 5 months ago
- ā30Updated 11 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.ā35Updated 4 months ago
- ā56Updated last week
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2ā34Updated last month
- ā11Updated 6 years ago