Alternatives and similar repositories for scyan

Users that are interested in scyan are comparing it to the libraries listed below

• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆38Updated last week
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆80Updated 3 weeks ago
• scverse / spatialdata-notebooks
  ☆54Updated this week
• Feanor007 / MESA
  A python package for Multiomics and Ecological Spatial Analysis (MESA)
  ☆20Updated 3 months ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆36Updated last week
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆32Updated this week
• ElementoLab / utag
  ☆36Updated last year
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆27Updated 9 months ago
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆29Updated last month
• scverse / spatialdata-io
  ☆63Updated 2 weeks ago
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆25Updated this week
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated 9 months ago
• bioFAM / mofax
  Work with trained factor models in Python
  ☆33Updated 8 months ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆51Updated last week
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆57Updated last month
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆53Updated 3 weeks ago
• theislab / scTab
  ☆59Updated 10 months ago
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆26Updated last month
• estellad / SpatialExperimentIO
  Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.
  ☆15Updated 2 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆27Updated this week
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆23Updated 11 months ago
• buettnerlab / convexgating
  Optimal gating strategies for flow and mass cytometry.
  ☆13Updated 3 months ago
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆28Updated 2 weeks ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆21Updated 6 months ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆59Updated last week
• Mr-Milk / SpatialTis
  Spatial analysis toolkit for single cell multiplexed tissue data
  ☆30Updated 10 months ago
• BiomedicalMachineLearning / Spacell
  ☆26Updated 5 years ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated last year
• scverse / spatialdata-plot
  Static plotting for spatialdata
  ☆62Updated this week
• wanglab-broad / CAST
  CAST package
  ☆40Updated 8 months ago