MICS-Lab / scyan

Related projects: ⓘ

• ckmah / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆63Updated last week
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆23Updated last year
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆23Updated last week
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆27Updated last week
• scverse / spatialdata-notebooks
  ☆35Updated last week
• scverse / spatialdata-plot
  Static plotting for spatialdata
  ☆27Updated this week
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data.
  ☆14Updated this week
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆18Updated this week
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆41Updated this week
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆14Updated last month
• Mr-Milk / SpatialTis
  Spatial analysis toolkit for single cell multiplexed tissue data
  ☆29Updated 2 weeks ago
• HiDiHlabs / ssam
  ☆26Updated 3 years ago
• ElementoLab / utag
  ☆33Updated 5 months ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆25Updated 3 months ago
• Vizgen / vizgen-postprocessing
  ☆24Updated 7 months ago
• bioFAM / mofax
  Work with trained factor models in Python
  ☆25Updated 7 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆48Updated 3 months ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆61Updated 9 months ago
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆23Updated last month
• BiomedicalMachineLearning / Spacell
  ☆25Updated 4 years ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆36Updated 2 weeks ago
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆21Updated 7 months ago
• scverse / spatialdata-io
  ☆35Updated last week
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆35Updated last week
• theislab / campa
  Conditional Autoencoders for Multiplexed Pixel Analysis
  ☆14Updated last year
• theislab / inVAE
  Invariant Representation learning
  ☆12Updated 2 months ago
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated last year
• BIMSBbioinfo / VoltRon
  Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration
  ☆36Updated this week
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆12Updated this week
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆53Updated last year