MICS-Lab / scyan
Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.
☆34Updated 5 months ago
Alternatives and similar repositories for scyan:
Users that are interested in scyan are comparing it to the libraries listed below
- Python package for Probe set selection for targeted spatial transcriptomics.☆36Updated 5 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆27Updated this week
- ☆26Updated 7 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆78Updated last month
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆54Updated last month
- Segmentation error aware clustering for multiplexed imaging☆17Updated 3 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆24Updated this week
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆16Updated last month
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆41Updated last week
- ☆35Updated last year
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 7 months ago
- Slides and Notebooks for scverse 2024☆17Updated 7 months ago
- Interoperability between SpatialData and the Xenium Explorer☆21Updated 9 months ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆22Updated last week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆35Updated 3 weeks ago
- ☆53Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 11 months ago
- Work with trained factor models in Python☆31Updated 6 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆26Updated this week
- ☆29Updated last year
- Optimal gating strategies for flow and mass cytometry.☆12Updated 3 weeks ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 3 months ago
- Spatial direct messaging detected by bivariate Moran☆26Updated last week
- Create PyTorch Datasets from AnnData☆20Updated 2 months ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated last week
- ☆25Updated 5 years ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆16Updated 5 months ago
- Flow & mass cytometry analytics.☆48Updated this week
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆31Updated 3 weeks ago
- ☆31Updated 3 months ago