RiosGroup / STAPL3DLinks
SegmenTation Analysis by ParaLlelization of 3D Datasets
☆11Updated last year
Alternatives and similar repositories for STAPL3D
Users that are interested in STAPL3D are comparing it to the libraries listed below
Sorting:
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- ☆32Updated 8 months ago
- ☆16Updated 4 months ago
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆52Updated 5 years ago
- Scripts capable of re-creating figures from Van Valen Lab publications☆18Updated 3 years ago
- ☆69Updated 2 years ago
- ☆38Updated last year
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆21Updated 3 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated this week
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- Tool to create images and configuration files for Minerva-Story☆16Updated 3 months ago
- CODEX data processing code☆12Updated 2 months ago
- ☆26Updated 5 years ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Updated 4 years ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆13Updated last month
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆35Updated 3 years ago
- Histology Topography Cytometry Analysis Toolbox☆67Updated 2 years ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆30Updated 4 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last week
- Integrated pipeline for multiplexed image analysis☆93Updated 5 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆58Updated last year
- A toolkit for processing multiplexed tissue images☆63Updated 3 weeks ago
- ☆11Updated 5 years ago
- ☆31Updated 4 years ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆44Updated last year
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆18Updated 6 months ago
- ☆34Updated last month
- MERFISH decoding software☆26Updated 2 weeks ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆25Updated 5 months ago