a-h-b / binnyLinks
☆29Updated 2 years ago
Alternatives and similar repositories for binny
Users that are interested in binny are comparing it to the libraries listed below
Sorting:
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆60Updated 5 months ago
- BEAV: Bacterial Element Annotation reVamped☆68Updated 3 weeks ago
- Calculate assocations between genes and traits☆25Updated 6 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- Gene Absence Presence Identification tool.☆27Updated 5 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated last month
- Bacterial GWAS analysis☆43Updated last month
- MAGScoT - a MAG scoring and refinement tool☆36Updated 11 months ago
- ☆53Updated 2 months ago
- ☆20Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 6 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- whole genome MLST analysis☆47Updated 3 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated last month
- KEGG Module Evaluation Tool☆31Updated last year
- Discover and annotate the virome☆49Updated 3 weeks ago
- Prophage Activity Estimator☆26Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- More scalable dereplication for metagenome assembled genomes☆68Updated this week
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆75Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 4 months ago