a-h-b / binnyLinks
☆28Updated last year
Alternatives and similar repositories for binny
Users that are interested in binny are comparing it to the libraries listed below
Sorting:
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆54Updated last month
- KEGG Module Evaluation Tool☆30Updated last year
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- Discover and annotate the virome☆43Updated 2 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆28Updated 8 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- ☆20Updated 9 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated 2 months ago
- ☆52Updated last year
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- ☆54Updated last year
- Estimate metagenomic coverage and sequence diversity☆54Updated 10 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆37Updated 2 years ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆16Updated 2 years ago
- ☆25Updated 6 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- whole genome MLST analysis☆43Updated 2 weeks ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 4 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 2 months ago
- Add new taxa or taxonomic groups to the NCBI Taxdump files☆20Updated 5 years ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year