YunyiShen / CAR-LASSOLinks
Conditional Auto-Regressive LASSO in R
☆20Updated 3 years ago
Alternatives and similar repositories for CAR-LASSO
Users that are interested in CAR-LASSO are comparing it to the libraries listed below
Sorting:
- ☆19Updated 2 weeks ago
- Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observ…☆16Updated 10 months ago
- babette is an R package to work with BEAST2☆46Updated last month
- Disease outbreak reconstruction from epidemiological and genetic data☆34Updated last year
- Computes affinity between two entities based on their co-occurrence☆28Updated 5 months ago
- Utilities and distributions for (birth-death) skyline models.☆10Updated 6 years ago
- A textbook for phylogenetic comparative methods.☆43Updated 6 years ago
- a take on ordination plots using ggplot2☆65Updated last year
- ☆36Updated last year
- ☆21Updated last year
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated last week
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 6 months ago
- R package for creating sequence logo plots☆22Updated last year
- Calculate distances between phylogenetic trees in R☆34Updated 3 weeks ago
- Dendrograms for Evolutionary Analysis☆11Updated 6 years ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 6 years ago
- diversitree: comparative phylogenetic analyses of diversification☆33Updated last year
- Analysis with Profile Hidden Markov Models☆22Updated last year
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 3 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated last year
- Molecular Epidemiology of Viruses in R☆19Updated 10 years ago
- Implementation of the EM algorithm for the detection of shifts in a phylogeny.☆18Updated 2 months ago
- R Package growthrates☆27Updated 3 months ago
- ☆11Updated 7 months ago
- Ordination lectures for Ecological Methods in Oulu☆21Updated last year
- Explore spaces of phylogenetic trees☆29Updated 3 months ago
- Phylogenetic inference using Stan☆23Updated 9 months ago
- A Toolbox for Manipulating Biological Sequences in R☆26Updated 2 months ago
- NBZIMM (Negative Binomial and Zero-Inflated Mixed Models)☆36Updated last year
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Updated 2 years ago