Ultra-rapid detection of viral variants directly from sequencing data
☆46Jul 17, 2026Updated this week
Alternatives and similar repositories for bronko
Users that are interested in bronko are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆40Apr 6, 2026Updated 3 months ago
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated last week
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Ultrafast identification of signature sequences in microbial genomes☆19Jun 10, 2026Updated last month
- A new high-resolution long-read metagenome assembler for even noisy reads☆157Jul 3, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A SIMD-accelerated library to compute random minimizers☆46Jul 7, 2026Updated 2 weeks ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 4 months ago
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated last year
- An extensible and performant aligner and read mapper☆98Updated this week
- Fast DNA search and [host] depletion using minimizers☆117Updated this week
- ☆20Jan 13, 2026Updated 6 months ago
- Genome browser 🧬👀🚀☆34Jun 14, 2026Updated last month
- Bitpacked sequence trait and implementation☆19Jul 7, 2026Updated 2 weeks ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Sketch-based surveillance platform☆14Jul 2, 2026Updated 2 weeks ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Jan 22, 2026Updated 5 months ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- Tool to submit viral sequences to Genbank.☆16May 14, 2026Updated 2 months ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆24Aug 22, 2025Updated 10 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21May 31, 2026Updated last month
- Surveillance of pathogens using population genomics and sequencing☆61Apr 30, 2026Updated 2 months ago
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆50Updated this week
- Plasmid analysis using rearrangement distances☆56Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated last week
- Ultra-fast preprocessing and quality control for long-read sequencing data☆232Sep 6, 2025Updated 10 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated last month
- gemsparcl 💎✨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic life☆16Jun 16, 2026Updated last month
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Jul 14, 2026Updated last week
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆28Jun 20, 2026Updated last month
- Genome size estimation from long read overlaps☆92Jun 22, 2026Updated 3 weeks ago
- A high-performance in-silico PCR tool for primer matching and product extraction from FASTA and GenBank sequences.☆18Feb 25, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last week
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆45Updated this week
- Bit-packed and well-typed biological sequences☆46May 17, 2026Updated 2 months ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆43Dec 18, 2025Updated 7 months ago
- Overview of our data for microbial genomic benchmarking☆41Jun 19, 2026Updated last month
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆46Updated this week