Ultra-rapid detection of viral variants directly from sequencing data
☆38Feb 17, 2026Updated last month
Alternatives and similar repositories for bronko
Users that are interested in bronko are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- µbinfie blog☆19Jul 21, 2025Updated 8 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Dec 3, 2025Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Bitpacked sequence trait and implementation☆16Feb 27, 2026Updated last month
- ☆15Jan 28, 2026Updated 2 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆24Aug 1, 2025Updated 8 months ago
- DEPRECATED: Use Cenote-Taker 3 instead☆14Jan 19, 2024Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆59Jan 7, 2026Updated 3 months ago
- ☆10Dec 16, 2024Updated last year
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Nov 22, 2024Updated last year
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- k-mers and the like☆22Updated this week
- ☆46Nov 21, 2025Updated 4 months ago
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated last month
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated last month
- ☆18Dec 26, 2025Updated 3 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Mar 30, 2026Updated last week
- Overview of our data for microbial genomic benchmarking☆36Feb 5, 2026Updated 2 months ago
- ☆16Apr 6, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆38Updated this week
- ☆18May 13, 2021Updated 4 years ago
- Fast viral consensus genome reconstruction☆26Feb 5, 2026Updated 2 months ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 6 months ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆66Updated this week
- Rust bindings to minimap2 library☆109Mar 30, 2026Updated last week
- Computation of average nucleotide identity with the use of MMseqs2☆16Dec 11, 2024Updated last year
- ☆52Jan 16, 2026Updated 2 months ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- A SIMD-accelerated library to compute random minimizers☆39Updated this week
- Immuological gene typing and annotation for genome assembly☆38Mar 13, 2025Updated last year
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Jan 23, 2026Updated 2 months ago