Ultra-rapid detection of viral variants directly from sequencing data
☆40Feb 17, 2026Updated 2 months ago
Alternatives and similar repositories for bronko
Users that are interested in bronko are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆17Nov 18, 2024Updated last year
- µbinfie blog☆19Jul 21, 2025Updated 9 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆22Dec 11, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Dec 3, 2025Updated 4 months ago
- Bitpacked sequence trait and implementation☆18Feb 27, 2026Updated 2 months ago
- ☆15Jan 28, 2026Updated 3 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆29Aug 1, 2025Updated 9 months ago
- DEPRECATED: Use Cenote-Taker 3 instead☆14Jan 19, 2024Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆59Jan 7, 2026Updated 3 months ago
- ☆10Dec 16, 2024Updated last year
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Nov 22, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 3 months ago
- k-mers and the like☆22Updated this week
- ☆47Nov 21, 2025Updated 5 months ago
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 2 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 2 months ago
- ☆18Apr 18, 2026Updated last week
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- Overview of our data for microbial genomic benchmarking☆37Apr 22, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆16Apr 6, 2023Updated 3 years ago
- ☆18May 13, 2021Updated 4 years ago
- Fast viral consensus genome reconstruction☆26Feb 5, 2026Updated 2 months ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 7 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆39Apr 6, 2026Updated 3 weeks ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆69Updated this week
- Rust bindings to minimap2 library☆110Mar 30, 2026Updated last month
- ☆56Jan 16, 2026Updated 3 months ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- viralFlye pipeline☆19Aug 12, 2024Updated last year
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Immuological gene typing and annotation for genome assembly☆39Mar 13, 2025Updated last year
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Jan 23, 2026Updated 3 months ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆23Updated this week