smdabdoub / MicrobiomeInformaticsWebinarWeek3Links
Week 3 of the OSU CoMS Webinar: Introduction to Amplicon Sequencing (QIIME, DADA2, mothur) and Ecological Statistics
☆10Updated 2 years ago
Alternatives and similar repositories for MicrobiomeInformaticsWebinarWeek3
Users that are interested in MicrobiomeInformaticsWebinarWeek3 are comparing it to the libraries listed below
Sorting:
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆12Updated 2 years ago
- Metagenomic Analysis in Real Time☆28Updated 3 weeks ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- ☆22Updated 2 years ago
- Predict plasmids from uncorrected long read data☆41Updated last month
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆12Updated 9 months ago
- ☆11Updated 4 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Order and orientation of complete bacterial genomes☆29Updated 4 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆19Updated last year
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Updated 2 years ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆16Updated 8 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆15Updated 3 years ago
- Intra-species bacterial contamination detection☆25Updated 9 months ago
- ☆18Updated 3 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- Long read metagenomics practical at EBAME18☆18Updated 7 years ago
- Calculate assocations between genes and traits☆29Updated 9 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated this week
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 3 years ago