smdabdoub / MicrobiomeInformaticsWebinarWeek3Links
Week 3 of the OSU CoMS Webinar: Introduction to Amplicon Sequencing (QIIME, DADA2, mothur) and Ecological Statistics
☆10Updated 2 years ago
Alternatives and similar repositories for MicrobiomeInformaticsWebinarWeek3
Users that are interested in MicrobiomeInformaticsWebinarWeek3 are comparing it to the libraries listed below
Sorting:
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆12Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Metagenomic Analysis in Real Time☆28Updated last week
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆16Updated 7 months ago
- ☆22Updated 2 years ago
- ☆11Updated 4 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆12Updated 8 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- ☆18Updated 3 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- MAG Circularization Method☆32Updated 3 years ago
- BEAV: Bacterial Element Annotation reVamped☆70Updated 2 months ago
- Calculate assocations between genes and traits☆28Updated 7 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Bacterial GWAS analysis☆45Updated 3 months ago
- Population genomics from metagenomes☆12Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Interpretative standards for AMR genotypes☆25Updated last week
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆19Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆64Updated this week
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆16Updated 11 months ago
- Order and orientation of complete bacterial genomes☆29Updated 3 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the…☆13Updated 3 years ago