Alternatives and similar repositories for MicrobiomeInformaticsWebinarWeek3

Users that are interested in MicrobiomeInformaticsWebinarWeek3 are comparing it to the libraries listed below

• ifremer-bioinformatics / samba
  Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
  ☆13Updated 2 years ago
• GenomicsAotearoa / environmental_metagenomics
  A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.
  ☆12Updated 11 months ago
• gnanibioinfo / EzMAP
  ☆11Updated 4 years ago
• USDA-ARS-GBRU / metagenomics
  Tutorial for Metagenomics Analyses
  ☆10Updated 5 years ago
• putonti / virMine
  ☆18Updated 3 years ago
• WatsonLab / MAGpy
  Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
  ☆61Updated 2 years ago
• ukhsa-collaboration / LOMA
  A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.
  ☆17Updated 10 months ago
• richardmleggett / MARTi
  Metagenomic Analysis in Real Time
  ☆29Updated 2 months ago
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆29Updated 11 months ago
• d-mcgrath / MetaPathPredict
  A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.
  ☆23Updated 5 months ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆50Updated 3 years ago
• aomlomics / tourmaline
  Amplicon sequence processing workflow using QIIME 2 and Snakemake
  ☆45Updated last month
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆33Updated last year
• MadsAlbertsen / mmgenome
  Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes
  ☆27Updated 8 years ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• jessiewu / bacterialGWAS
  A pipeline for performing genome-wide association tests for bacterial genomes.
  ☆27Updated 7 years ago
• snayfach / MicrobeCensus
  MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
  ☆48Updated 5 years ago
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆25Updated last week
• faylward / viralrecall
  Detection of NCLDV signatures in 'omic data
  ☆35Updated last month
• ErnakovichLab / dada2_ernakovichlab
  ☆19Updated this week
• leylabmpi / Struo
  Ley Lab MetaGenome Profiler DataBase generator
  ☆49Updated 3 years ago
• arumugamlab / MIntO
  Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data
  ☆17Updated 2 months ago
• drpowell / FriPan
  Interactive, web tool for exploring pan-genome of bacterial strains
  ☆48Updated 3 weeks ago
• aweimann / traitar
  ☆22Updated 2 years ago
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆37Updated last year
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆32Updated 2 months ago
• zheminzhou / SPARSE
  Strain Prediction and Analysis with Representative SEquence
  ☆19Updated last year
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆71Updated last month
• jonas-fuchs / SARS-CoV-2-analyses
  Collection of R scripts for SARS-CoV-2 (variant) analyses
  ☆12Updated 2 years ago
• deng-lab / viroprofiler
  A containerized bioinformatics pipeline for viral metagenomic data analysis
  ☆37Updated last year