smdabdoub / MicrobiomeInformaticsWebinarWeek3Links
Week 3 of the OSU CoMS Webinar: Introduction to Amplicon Sequencing (QIIME, DADA2, mothur) and Ecological Statistics
☆10Updated 2 years ago
Alternatives and similar repositories for MicrobiomeInformaticsWebinarWeek3
Users that are interested in MicrobiomeInformaticsWebinarWeek3 are comparing it to the libraries listed below
Sorting:
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆12Updated 2 years ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆16Updated 6 months ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆12Updated 7 months ago
- ☆11Updated 4 years ago
- Population genomics from metagenomes☆12Updated last year
- ☆18Updated 3 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated 3 weeks ago
- Metagenomic Analysis in Real Time☆28Updated this week
- Bacterial GWAS analysis☆43Updated 2 months ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13Updated 3 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- Calculate assocations between genes and traits☆25Updated 6 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 3 years ago
- ☆17Updated this week
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated last week
- scripts for microbiome analysis☆11Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 4 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- Plot microbiome time series in parallel☆26Updated last year
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the…☆13Updated 3 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆66Updated 3 years ago