smdabdoub / MicrobiomeInformaticsWebinarWeek3Links
Week 3 of the OSU CoMS Webinar: Introduction to Amplicon Sequencing (QIIME, DADA2, mothur) and Ecological Statistics
☆10Updated 2 years ago
Alternatives and similar repositories for MicrobiomeInformaticsWebinarWeek3
Users that are interested in MicrobiomeInformaticsWebinarWeek3 are comparing it to the libraries listed below
Sorting:
- ☆16Updated this week
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆11Updated 3 months ago
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆12Updated last year
- ☆24Updated 6 years ago
- A simple script to display stuff on a world map with R and ggplot☆17Updated last year
- Calculate assocations between genes and traits☆23Updated 2 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 7 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated 3 months ago
- ☆17Updated 2 years ago
- scripts for microbiome analysis☆11Updated 10 months ago
- Plot microbiome time series in parallel☆26Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- dada2 formatted nifH database☆11Updated last year
- ☆25Updated last year
- ☆10Updated 4 years ago
- ☆50Updated last year
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- R package for microbial pangenomics☆23Updated 3 years ago
- Metagenomic Analysis in Real Time☆24Updated last week
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- ☆55Updated 2 weeks ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 7 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆47Updated last month
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆59Updated 9 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆31Updated 4 months ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago