Alternatives and similar repositories for scATACseq-analysis-notes

Users that are interested in scATACseq-analysis-notes are comparing it to the libraries listed below

• hbctraining / Investigating-chromatin-biology-ChIPseq
  ☆92Updated 3 weeks ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆205Updated 8 months ago
• navinlabcode / copykat
  ☆235Updated 11 months ago
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆215Updated 4 months ago
• neurorestore / Libra
  ☆169Updated 3 weeks ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆279Updated 2 years ago
• erilu / bulk-rnaseq-analysis
  A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…
  ☆87Updated 4 years ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆191Updated last week
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆214Updated last month
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆93Updated 2 years ago
• mdozmorov / scATAC-seq_notes
  scATAC-seq data analysis tools and papers
  ☆109Updated last year
• dviraran / xCell
  Cell types enrichment analysis
  ☆197Updated last year
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated 2 years ago
• IanevskiAleksandr / sc-type
  ☆266Updated 6 months ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆140Updated 3 years ago
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆136Updated 2 years ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆158Updated 2 years ago
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆174Updated 10 months ago
• tallulandrews / scRNASeqPipeline
  ☆118Updated 6 years ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆258Updated last week
• hbctraining / Intro-to-bulk-RNAseq
  Introduction to bulk RNA-seq
  ☆108Updated last month
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆163Updated last year
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆154Updated 5 months ago
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆283Updated 2 years ago
• huayc09 / SeuratExtend
  ☆139Updated this week
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆227Updated 2 years ago
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆333Updated this week
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆181Updated 6 months ago
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆224Updated last month