crazyhottommy / scATACseq-analysis-notes
my notes for scATACseq analysis
☆124Updated 11 months ago
Alternatives and similar repositories for scATACseq-analysis-notes:
Users that are interested in scATACseq-analysis-notes are comparing it to the libraries listed below
- A guide to using a Seurat object in conjunction with RNA Velocity☆138Updated 3 years ago
- ☆228Updated 9 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆279Updated 2 years ago
- A tool for detecting somatic variants in single cell data☆198Updated 7 months ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆210Updated 2 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆268Updated 2 years ago
- Cell types enrichment analysis☆194Updated 10 months ago
- ☆165Updated 7 months ago
- ☆118Updated 6 years ago
- chromatin Variability Across Regions (of the genome!)☆172Updated 9 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆92Updated 2 years ago
- This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset☆146Updated 4 years ago
- ☆89Updated this week
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆190Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆152Updated 2 years ago
- scATAC-seq data analysis tools and papers☆106Updated last year
- Clone of the Bioconductor repository for the SingleR package.☆185Updated 2 months ago
- Single cell RNA sequencing analysis course☆208Updated last week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆249Updated last week
- ☆260Updated 5 months ago
- ☆131Updated 6 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆317Updated last year
- Interactively analyze single cell genomic data☆182Updated last week
- ☆133Updated this week
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆186Updated 2 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆226Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- Analysis pipeline for ATAC-seq data☆57Updated last year