crazyhottommy / scATACseq-analysis-notes
my notes for scATACseq analysis
☆125Updated last year
Alternatives and similar repositories for scATACseq-analysis-notes:
Users that are interested in scATACseq-analysis-notes are comparing it to the libraries listed below
- Cell types enrichment analysis☆195Updated 11 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆138Updated 3 years ago
- A tool for detecting somatic variants in single cell data☆199Updated 7 months ago
- ☆89Updated this week
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆210Updated 3 months ago
- ☆231Updated 10 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆279Updated 2 years ago
- ☆261Updated 5 months ago
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆81Updated 4 years ago
- scATAC-seq data analysis tools and papers☆107Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆273Updated 2 years ago
- Single cell RNA sequencing analysis course☆209Updated 3 weeks ago
- ☆118Updated 6 years ago
- scDIOR: Single cell data IO softwaRe☆139Updated 3 years ago
- Analysis of single cell RNA-seq data course☆135Updated 2 years ago
- Introduction to bulk RNA-seq☆106Updated this week
- ☆166Updated 8 months ago
- Clone of the Bioconductor repository for the SingleR package.☆187Updated 2 months ago
- chromatin Variability Across Regions (of the genome!)☆173Updated 9 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- Clustering scRNAseq by genotypes☆179Updated 5 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆92Updated 2 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆227Updated 2 years ago
- Analysis pipeline for ATAC-seq data☆59Updated last year
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆252Updated last week
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- Bench-marking classification tools for scRNA-seq data☆186Updated 2 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆156Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆271Updated 3 weeks ago
- Analysis Pipeline for Single Cell ATAC-seq☆317Updated 2 years ago