crazyhottommy / scATACseq-analysis-notesLinks
my notes for scATACseq analysis
☆132Updated last year
Alternatives and similar repositories for scATACseq-analysis-notes
Users that are interested in scATACseq-analysis-notes are comparing it to the libraries listed below
Sorting:
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- A tool for detecting somatic variants in single cell data☆215Updated last year
- scATAC-seq data analysis tools and papers☆125Updated 3 months ago
- ☆256Updated last week
- Single-cell Transcriptome and Regulome Analysis Pipeline☆293Updated 2 years ago
- ☆179Updated last month
- ☆275Updated 11 months ago
- Single cell RNA sequencing analysis course☆224Updated last month
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆296Updated 2 years ago
- ☆177Updated 5 months ago
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆100Updated 5 years ago
- scDIOR: Single cell data IO softwaRe☆148Updated 3 years ago
- Analysis pipeline for ATAC-seq data☆76Updated last year
- ☆118Updated 7 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆231Updated 2 years ago
- Cell types enrichment analysis☆203Updated last year
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- ☆97Updated 3 weeks ago
- reticulate-free single cell format conversion☆191Updated last month
- Bench-marking classification tools for scRNA-seq data☆189Updated 3 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆168Updated 2 years ago
- Clone of the Bioconductor repository for the SingleR package.☆196Updated last week
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆227Updated last month
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆194Updated 5 years ago
- Clustering scRNAseq by genotypes