scWGCNA
☆63Nov 8, 2022Updated 3 years ago
Alternatives and similar repositories for scWGCNA
Users that are interested in scWGCNA are comparing it to the libraries listed below
Sorting:
- Human brain, >200,000 nuclei☆24Jun 17, 2021Updated 4 years ago
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- High dimensional weighted gene co-expression network analysis☆465Feb 13, 2026Updated 3 weeks ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆291Updated this week
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- A toolkit for single-cell immune profiling☆364Feb 28, 2026Updated last week
- ☆54Aug 1, 2024Updated last year
- TRAjectory-based Differential Expression analysis for SEQuencing data☆290Jun 17, 2025Updated 8 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆219Updated this week
- R package for pathway analysis in scRNA-seq data☆77Aug 17, 2024Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆29Updated this week
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- Multi-sample Unified Discriminant ANalysis☆75Apr 11, 2023Updated 2 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- Harvard FAS informatics scRNAseq workshop website☆39Aug 8, 2019Updated 6 years ago
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year
- ☆14Oct 11, 2019Updated 6 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆141Dec 25, 2021Updated 4 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Jan 10, 2024Updated 2 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Mar 30, 2024Updated last year
- Inference of TCR motifs☆32Jun 17, 2025Updated 8 months ago
- ☆50Nov 28, 2025Updated 3 months ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆21Feb 4, 2024Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- A R package for advanced single cell data viz☆73Aug 29, 2025Updated 6 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆303Mar 6, 2023Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- Detect doublets in single-cell RNA-seq data☆164Dec 29, 2020Updated 5 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Aug 7, 2023Updated 2 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆175Jun 10, 2024Updated last year
- snakemake workflow for post-processing scATACseq data☆23Jul 15, 2020Updated 5 years ago
- Identifying cell subpopulational differences among single-cell biospecimens☆15Sep 27, 2024Updated last year
- scATAC-seq data analysis tools and papers☆128Jul 1, 2025Updated 8 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Aug 10, 2023Updated 2 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆315Nov 1, 2022Updated 3 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆24Aug 15, 2023Updated 2 years ago
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆27Jul 8, 2025Updated 8 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆57Jun 1, 2025Updated 9 months ago