milaboratory / mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
☆340Updated last month
Alternatives and similar repositories for mixcr:
Users that are interested in mixcr are comparing it to the libraries listed below
- TCR and BCR assembly from RNA-seq data☆293Updated this week
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆278Updated 7 months ago
- RNA-seq workflow using STAR and DESeq2☆335Updated 6 months ago
- Application for making ENCODE Blacklists☆288Updated 3 years ago
- Intro to ChIPseq using HPC☆294Updated 2 years ago
- 🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!☆133Updated this week
- ENCODE ATAC-seq pipeline☆401Updated 6 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆448Updated 2 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆310Updated last year
- GTEx & TOPMed data production and analysis pipelines☆357Updated 2 weeks ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆394Updated 10 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆426Updated 11 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆263Updated last year
- 10x Genomics Single Cell Analysis☆380Updated this week
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data☆134Updated 8 months ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆217Updated 2 months ago
- Transcript assembly and quantification for RNA-Seq☆410Updated last month
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆405Updated last month
- ATAC-seq peak-calling and QC analysis pipeline☆196Updated this week
- parallel fastq-dump wrapper☆287Updated last year
- Customizable workflows based on snakemake and python for the analysis of NGS data☆392Updated this week
- SUPPA: Fast quantification of splicing and differential splicing☆268Updated 7 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆263Updated 4 months ago
- A python extension for quick access to bigWig and bigBed files☆224Updated 3 weeks ago
- T/B cell receptor sequencing analysis notes☆217Updated 2 months ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆181Updated 3 weeks ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆207Updated 3 weeks ago
- ☆253Updated 3 months ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆500Updated 4 months ago