milaboratory / mixcrLinks
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
☆378Updated 2 weeks ago
Alternatives and similar repositories for mixcr
Users that are interested in mixcr are comparing it to the libraries listed below
Sorting:
- TCR and BCR assembly from RNA-seq data☆333Updated 3 weeks ago
- 10x Genomics Single Cell Analysis☆437Updated 10 months ago
- Application for making ENCODE Blacklists☆329Updated 4 years ago
- ENCODE ATAC-seq pipeline☆437Updated last year
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆287Updated last year
- Intro to ChIPseq using HPC☆317Updated 2 years ago
- Collections of library structure and sequence of popular single cell genomic methods☆486Updated 6 months ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆533Updated 5 months ago
- ENCODE ChIP-seq pipeline☆275Updated last year
- T/B cell receptor sequencing analysis notes☆268Updated last year
- ☆282Updated last month
- RNA-seq workflow using STAR and DESeq2☆348Updated last week
- Analysis Pipeline for Single Cell ATAC-seq☆321Updated 2 years ago
- GTEx & TOPMed data production and analysis pipelines☆390Updated 2 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated last week
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆303Updated last month
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆200Updated 5 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆218Updated 3 weeks ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆236Updated last week
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆456Updated last year
- parallel fastq-dump wrapper☆301Updated 2 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆429Updated last year
- SUPPA: Fast quantification of splicing and differential splicing☆289Updated last month
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆335Updated 3 weeks ago
- Quick mining and visualization of NGS data by integrating genomic databases☆268Updated 2 years ago
- Analysis of single cell RNA-seq data course☆158Updated 3 years ago
- A tool to find sequencing data and metadata from public databases.☆591Updated last year
- Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-dropl…☆303Updated last week
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆242Updated 5 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆295Updated 2 years ago