MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
☆396Jul 10, 2026Updated 2 weeks ago
Alternatives and similar repositories for mixcr
Users that are interested in mixcr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis of immune repertoire sequencing results☆145Updated this week
- TCR and BCR assembly from RNA-seq data☆358Updated this week
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆340Nov 18, 2025Updated 8 months ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆54Jan 7, 2026Updated 6 months ago
- Git-based antigen specificity database storage & management.☆155Jun 11, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Dec 4, 2020Updated 5 years ago
- 🛜 A lightweight immune repertoire browser☆28Dec 10, 2019Updated 6 years ago
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.☆40Jun 8, 2020Updated 6 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆136Nov 28, 2023Updated 2 years ago
- Clonotype Neighbor Graph Analysis☆100Jun 15, 2026Updated last month
- High-throughput mapping and domain partitioning of antigen receptor sequences☆55Updated this week
- A RepSeq processing swiss-knife☆43Mar 29, 2024Updated 2 years ago
- A toolkit for single-cell immune profiling☆373Jul 9, 2026Updated 2 weeks ago
- T/B cell receptor sequencing analysis notes☆280Dec 1, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆124Apr 26, 2025Updated last year
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- Absolve antibody variable domain sequence analysis☆18Sep 13, 2018Updated 7 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Apr 17, 2024Updated 2 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆64Updated this week
- IMGT segment library converted to RepSeq.IO JSON format☆14Mar 21, 2023Updated 3 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆127Updated this week
- Precision HLA typing from next-generation sequencing data☆220May 20, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆28Dec 16, 2021Updated 4 years ago
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 3 months ago
- Decombinator: fast, error-correcting analysis of TCR repertoires☆28May 18, 2026Updated 2 months ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆546Jul 6, 2026Updated 2 weeks ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Oct 15, 2025Updated 9 months ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆118Sep 2, 2024Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- ☆183Updated this week
- flexible CDR based distance metrics☆74Dec 16, 2025Updated 7 months ago
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆21Nov 19, 2025Updated 8 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆419May 25, 2026Updated last month
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆265Jul 14, 2026Updated last week