Alternatives and similar repositories for scRNAseq-analysis-notes

Users that are interested in scRNAseq-analysis-notes are comparing it to the libraries listed below

• mdozmorov / scRNA-seq_notes
  A list of scRNA-seq analysis tools
  ☆727Updated 2 weeks ago
• hbctraining / Intro-to-scRNAseq
  ☆618Updated 4 months ago
• sqjin / CellChat
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆725Updated last year
• hbctraining / scRNA-seq
  ☆575Updated 4 years ago
• hemberg-lab / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆675Updated 3 years ago
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆633Updated 6 months ago
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆815Updated last year
• mousepixels / sanbomics_scripts
  scripts and notebooks from sanbomics
  ☆435Updated 9 months ago
• zhanghao-njmu / SCP
  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
  ☆551Updated last year
• saeyslab / nichenetr
  NicheNet: predict active ligand-target links between interacting cells
  ☆559Updated last month
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆474Updated 3 months ago
• chris-mcginnis-ucsf / DoubletFinder
  R package for detecting doublets in single-cell RNA sequencing data
  ☆485Updated 5 months ago
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,030Updated 3 years ago
• theislab / scvelo
  RNA Velocity generalized through dynamical modeling
  ☆461Updated 6 months ago
• aertslab / pySCENIC
  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…
  ☆533Updated 2 months ago
• hbctraining / DGE_workshop
  ☆396Updated 3 years ago
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆500Updated 3 weeks ago
• mikelove / awesome-multi-omics
  List of software packages for multi-omics analysis
  ☆828Updated 4 months ago
• GreenleafLab / ArchR
  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
  ☆431Updated 6 months ago
• theislab / single-cell-best-practices
  https://www.sc-best-practices.org
  ☆1,000Updated last month
• agitter / single-cell-pseudotime
  An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
  ☆426Updated 3 weeks ago
• 10XGenomics / cellranger
  10x Genomics Single Cell Analysis
  ☆426Updated 6 months ago
• jinworks / CellChat
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
  ☆448Updated last month
• theislab / single-cell-tutorial
  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…
  ☆1,505Updated 2 years ago
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆330Updated this week
• aertslab / SCENIC
  SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
  ☆465Updated last year
• immunogenomics / harmony
  Fast, sensitive and accurate integration of single-cell data with Harmony
  ☆596Updated 9 months ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆310Updated 2 years ago
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆436Updated last year
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆440Updated 8 years ago