Alternatives and similar repositories for scRNAseq-analysis-notes

Users that are interested in scRNAseq-analysis-notes are comparing it to the libraries listed below

• sqjin / CellChat
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆728Updated last year
• mdozmorov / scRNA-seq_notes
  A list of scRNA-seq analysis tools
  ☆733Updated last week
• hbctraining / Intro-to-scRNAseq
  ☆621Updated 5 months ago
• hbctraining / scRNA-seq
  ☆580Updated 4 years ago
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆818Updated last year
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆477Updated 4 months ago
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,036Updated 3 years ago
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆635Updated 7 months ago
• hemberg-lab / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆675Updated 3 years ago
• hbctraining / DGE_workshop
  ☆395Updated 3 years ago
• saeyslab / nichenetr
  NicheNet: predict active ligand-target links between interacting cells
  ☆566Updated last month
• zhanghao-njmu / SCP
  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
  ☆560Updated last year
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆503Updated 2 weeks ago
• mousepixels / sanbomics_scripts
  scripts and notebooks from sanbomics
  ☆440Updated 9 months ago
• chris-mcginnis-ucsf / DoubletFinder
  R package for detecting doublets in single-cell RNA sequencing data
  ☆493Updated 5 months ago
• mikelove / awesome-multi-omics
  List of software packages for multi-omics analysis
  ☆834Updated this week
• theislab / single-cell-best-practices
  https://www.sc-best-practices.org
  ☆1,009Updated 2 months ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆311Updated 2 years ago
• aertslab / pySCENIC
  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…
  ☆538Updated 2 months ago
• GreenleafLab / ArchR
  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
  ☆431Updated 7 months ago
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆331Updated this week
• 10XGenomics / cellranger
  10x Genomics Single Cell Analysis
  ☆428Updated 7 months ago
• theislab / single-cell-tutorial
  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…
  ☆1,509Updated 2 years ago
• agitter / single-cell-pseudotime
  An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
  ☆428Updated this week
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆413Updated last month
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆443Updated 8 years ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆429Updated last year
• mdozmorov / HiC_tools
  A collection of tools for Hi-C data analysis
  ☆608Updated last month
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆441Updated 5 years ago
• crazyhottommy / awesome_spatial_omics
  tools and notes for spatial omics
  ☆314Updated 6 months ago