Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
☆123Mar 18, 2026Updated this week
Alternatives and similar repositories for TileDB-SOMA
Users that are interested in TileDB-SOMA are comparing it to the libraries listed below
Sorting:
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆83Updated this week
- Python interface to TileDB Cloud REST API☆15Mar 13, 2026Updated last week
- CZ CELLxGENE Discover Census☆117Jan 14, 2026Updated 2 months ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated last year
- Build contrasts for models defined with formulaic☆12Updated this week
- Clone of the Bioconductor repository for the TileDBArray package.☆11Jun 19, 2025Updated 9 months ago
- AnnData interoperability in R☆164Updated this week
- Rust Bindings for TileDB [early wip]☆17Updated this week
- R interface to TileDB: The Modern Database☆108Jan 9, 2026Updated 2 months ago
- Registries for biological ontologies.☆25Updated this week
- Shadow objects for AnnData and MuData (experimental)☆12Feb 28, 2025Updated last year
- machine-readable file format for genomic library sequence and structure☆128Updated this week
- Cloud-native vector similarity search and storage with efficient, serverless scale-out☆67Dec 16, 2025Updated 3 months ago
- MyTile is a MariaDB storage engine for accessing TileDB arrays☆29Oct 31, 2025Updated 4 months ago
- ☆13Apr 17, 2025Updated 11 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Jan 6, 2021Updated 5 years ago
- Package providing bioimaging functionality using TileDB. Source of the tiledb-bioimg Python package.☆18Dec 17, 2025Updated 3 months ago
- Python interface to the TileDB storage engine☆199Mar 6, 2026Updated 2 weeks ago
- Efficient variant-call data storage and retrieval library using the TileDB storage library.☆104Updated this week
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆16Oct 5, 2024Updated last year
- C# API for TileDB Embedded☆20Updated this week
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆22Jul 10, 2024Updated last year
- ☆16Sep 8, 2024Updated last year
- The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.☆88Updated this week
- SOMA PyTorch loaders☆13Sep 24, 2025Updated 5 months ago
- Code and documentation for the curation of cellxgene datasets☆53Mar 1, 2026Updated 3 weeks ago
- Sparse Lazy Array Format (SLAF) for Single-Cell Genomics☆56Mar 14, 2026Updated last week
- Python API and Jupyter widget for Vitessce☆62Updated this week
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆96Feb 18, 2026Updated last month
- a dataloader to work with large single cell datasets from lamindb☆36Feb 19, 2026Updated last month
- Distributed single-cell data analysis.☆39Updated this week
- An R package designed to demultiplex cell hashing data☆31Feb 10, 2026Updated last month
- An interactive explorer for single-cell transcriptomics data☆756Updated this week
- A Shiny web app for mapping datasets using Seurat v4☆145Nov 5, 2024Updated last year
- ☆72May 28, 2025Updated 9 months ago
- A performant scientific image visualization system.☆36Updated this week
- Examples of single-cell genomic analysis accelerated with RAPIDS☆345Aug 27, 2025Updated 6 months ago
- Implementation of the matrixStats API for sparse matrices☆54Apr 2, 2025Updated 11 months ago
- ☆65Sep 13, 2024Updated last year