single-cell-data / TileDB-SOMA
Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
☆103Updated this week
Alternatives and similar repositories for TileDB-SOMA:
Users that are interested in TileDB-SOMA are comparing it to the libraries listed below
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆74Updated 3 weeks ago
- CZ CELLxGENE Discover Census☆99Updated this week
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆100Updated last week
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆63Updated last year
- Code and documentation for the curation of cellxgene datasets☆43Updated this week
- Multimodal Data (.h5mu) implementation for Python☆93Updated last month
- Conversion between scRNA-seq objects☆171Updated this week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆61Updated last week
- Single-Cell Clustering Assessment Framework☆101Updated last year
- A Bayesian model for compositional single-cell data analysis☆162Updated last year
- software to detect doublets☆92Updated 3 months ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆70Updated last year
- Convert between AnnData and SingleCellExperiment☆132Updated this week
- AnnData interoperability in R☆75Updated last week
- Latent Embedding Multivariate Regression☆87Updated 5 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆69Updated this week
- Multiome GRN inference.☆120Updated last year
- trajectory inference☆97Updated 2 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 8 months ago
- ☆43Updated last week
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆147Updated last week
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Python implementation of the Loom file format - http://loompy.org☆142Updated 4 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆104Updated 6 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- Scanpy use cases.☆85Updated 4 years ago
- Scaling Single Cell Analysis to Millions of Cells☆196Updated this week
- Multi-modal single cell analysis pipelines☆58Updated 2 weeks ago