cole-trapnell-lab / monocle2-rge-paper
Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)
☆29Updated 4 years ago
Alternatives and similar repositories for monocle2-rge-paper:
Users that are interested in monocle2-rge-paper are comparing it to the libraries listed below
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- ☆16Updated 5 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- ☆32Updated 5 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- ☆12Updated 9 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆33Updated 11 months ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 4 years ago
- ☆18Updated last year
- ☆40Updated 4 years ago
- ☆47Updated 8 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆21Updated 8 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- ☆33Updated 5 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago