cole-trapnell-lab / monocle2-rge-paperLinks
Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)
☆29Updated 5 years ago
Alternatives and similar repositories for monocle2-rge-paper
Users that are interested in monocle2-rge-paper are comparing it to the libraries listed below
Sorting:
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆49Updated 11 months ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆47Updated 5 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Single-cell Case Control Analysis☆50Updated 8 months ago
- ☆34Updated last year
- ☆33Updated 6 years ago
- ☆27Updated 3 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated 2 weeks ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Reconstruction of spatial context of gene expression with optimal transport☆11Updated 6 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆20Updated last year
- ☆13Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- ☆47Updated 6 months ago
- ☆12Updated 5 years ago
- ☆29Updated 7 years ago