fish-quant / rna2segLinks
rna2seg
☆17Updated 7 months ago
Alternatives and similar repositories for rna2seg
Users that are interested in rna2seg are comparing it to the libraries listed below
Sorting:
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 months ago
- ☆36Updated 2 years ago
- An introduction to OME-Zarr for big bioimaging data☆23Updated this week
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- Python API and Jupyter widget for Vitessce☆60Updated last month
- ☆18Updated last year
- Interactive visualization of spatial omics data☆73Updated this week
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Updated 2 years ago
- ☆14Updated 2 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated last month
- Framework for image and flow cytometry analysis☆32Updated 3 months ago
- Raw format to OME-TIFF converter☆56Updated last month
- A plugin to visualise 3D spatial single cell omics☆20Updated 2 months ago
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- Segmentation error aware clustering for multiplexed imaging☆19Updated 11 months ago
- ☆86Updated last week
- ☆19Updated last month
- Integrated pipeline for multiplexed image analysis☆100Updated 3 weeks ago
- ☆33Updated 2 months ago
- ☆27Updated last year
- Piecewise alignment for layers of mosaics☆29Updated 4 months ago
- Static plotting for spatialdata☆73Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆104Updated this week
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- Efficient data structures and IO for whole slide image analysis☆17Updated last month
- Optimal gating strategies for flow and mass cytometry.☆16Updated 2 months ago
- comseg☆24Updated 11 months ago
- Multiple-choice microscopy pipeline☆144Updated last month
- QuPath extension to interactively align images☆26Updated 5 months ago
- RAnking Markers for CEll Segmentation☆12Updated 3 years ago