rna2seg
☆25May 15, 2025Updated last year
Alternatives and similar repositories for rna2seg
Users that are interested in rna2seg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- comseg☆24Feb 6, 2025Updated last year
- Jupyter notebook based multiplex image processing pipeline.☆10Jun 23, 2026Updated last month
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 3 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆41Apr 30, 2026Updated 3 months ago
- Single-cell differential expression☆19Apr 23, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Non-disruptive collagen characterization in clinical histopathology using cross-modality image synthesis☆11Apr 25, 2025Updated last year
- Immune Profiling of Atherosclerotic Plaques Identifies☆10Sep 18, 2023Updated 2 years ago
- Spatial One☆31Oct 31, 2024Updated last year
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆90May 25, 2026Updated 2 months ago
- GNN-based cell segmentation of spatial transcriptomics data☆22Aug 5, 2026Updated last week
- Deep learning based spot detection for FISH images.☆35Jan 7, 2026Updated 7 months ago
- Code for CHAMMI-75 - ICLR 2026☆18Jun 29, 2026Updated last month
- Accelerated CellStitch for 3D labeling of anisotropic image stacks☆15Mar 1, 2026Updated 5 months ago
- Single-cell multi-omics integration using Optimal Transport☆54Aug 14, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆32Jul 30, 2026Updated 2 weeks ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆17Jul 6, 2026Updated last month
- A performant scientific image visualization system.☆36Aug 5, 2026Updated last week
- An open and interoperable data framework for spatial omics data☆383Updated this week
- A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.☆10Apr 19, 2024Updated 2 years ago
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- ☆19May 12, 2026Updated 3 months ago
- ☆38Jul 31, 2026Updated last week
- Harmonize high-content image analysis tool outputs for processing with Pycytominer and other Cytomining tools.☆20Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Jun 6, 2023Updated 3 years ago
- Static plotting for spatialdata☆82Updated this week
- 2D and 3D image deconvolution with python☆15Sep 20, 2024Updated last year
- ☆17Jun 27, 2024Updated 2 years ago
- Use hodge decomposition for trajectory analysis☆26May 11, 2026Updated 3 months ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated 2 years ago
- ☆234Jul 30, 2026Updated 2 weeks ago
- ☆16Sep 8, 2024Updated last year
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆39Aug 3, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆290Jul 15, 2026Updated 3 weeks ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆12Mar 10, 2022Updated 4 years ago
- ☆38Jan 22, 2026Updated 6 months ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆39Jul 7, 2026Updated last month
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆50Oct 22, 2025Updated 9 months ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated last year