fish-quant / rna2seg
rna2seg
☆11Updated 3 weeks ago
Alternatives and similar repositories for rna2seg:
Users that are interested in rna2seg are comparing it to the libraries listed below
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 2 months ago
- Python API and Jupyter widget for Vitessce☆44Updated last week
- Minimum Information about Tissue Imaging☆20Updated last year
- ☆31Updated last year
- RAnking Markers for CEll Segmentation☆11Updated 3 years ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆17Updated this week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆22Updated 2 years ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆11Updated last year
- ☆17Updated last year
- Framework for image and flow cytometry analysis☆24Updated this week
- ☆16Updated 2 weeks ago
- A plugin to visualise 3D spatial single cell omics☆22Updated last year
- ☆17Updated last month
- ☆12Updated last week
- Segmentation error aware clustering for multiplexed imaging☆17Updated 3 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆12Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆42Updated this week
- Interoperability between SpatialData and the Xenium Explorer☆21Updated 8 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- ☆56Updated last week
- Single-cell spatial proteomics analysis that makes you happy!☆25Updated this week
- A Python package for single-cell spatial image analysis.☆18Updated last year
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆26Updated last month
- Interactive visualization of spatial omics data☆52Updated this week
- comseg☆19Updated 2 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 3 weeks ago
- UNet script, model, sample data☆12Updated last month
- QuPath extension to interactively align images☆23Updated 4 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 6 months ago