fish-quant / rna2seg
rna2seg
☆12Updated last week
Alternatives and similar repositories for rna2seg:
Users that are interested in rna2seg are comparing it to the libraries listed below
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 3 months ago
- Minimum Information about Tissue Imaging☆20Updated last year
- ☆32Updated last year
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆19Updated last week
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆16Updated 3 weeks ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆11Updated last year
- comseg☆19Updated 3 months ago
- ☆13Updated 2 weeks ago
- Python API and Jupyter widget for Vitessce☆44Updated this week
- Interoperability between SpatialData and the Xenium Explorer☆21Updated 9 months ago
- Optimal gating strategies for flow and mass cytometry.☆12Updated 3 weeks ago
- Segmentation error aware clustering for multiplexed imaging☆17Updated 3 months ago
- ☆17Updated last year
- ☆60Updated 2 weeks ago
- ☆16Updated last month
- A plugin to visualise 3D spatial single cell omics☆22Updated last year
- Interactive visualization of spatial omics data☆53Updated last week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 7 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆27Updated this week
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆42Updated 9 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆14Updated 2 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆40Updated last week
- ☆17Updated 2 months ago
- ☆28Updated 6 months ago
- ☆16Updated 8 months ago
- Static plotting for spatialdata☆57Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆44Updated this week
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 11 months ago