fish-quant / rna2segLinks
rna2seg
☆17Updated 6 months ago
Alternatives and similar repositories for rna2seg
Users that are interested in rna2seg are comparing it to the libraries listed below
Sorting:
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 weeks ago
- ☆35Updated last year
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- ☆18Updated last year
- Python API and Jupyter widget for Vitessce☆59Updated last week
- Raw format to OME-TIFF converter☆56Updated 2 months ago
- Interactive visualization of spatial omics data☆72Updated last week
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆11Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 6 months ago
- A plugin to visualise 3D spatial single cell omics☆21Updated last month
- ☆77Updated last week
- ☆13Updated 2 weeks ago
- Image registration (alignment) software for large microscopy images☆26Updated 2 years ago
- ☆27Updated last year
- Segmentation error aware clustering for multiplexed imaging☆19Updated 10 months ago
- Framework for image and flow cytometry analysis☆31Updated last month
- Integrated pipeline for multiplexed image analysis☆99Updated 7 months ago
- Deep learning based spot detection for FISH images.☆25Updated 2 months ago
- A relabeling tool for tiled segmentation with Dask☆16Updated last year
- Static plotting for spatialdata☆71Updated this week
- ☆31Updated last month
- ☆18Updated 6 months ago
- Interactive visualization and sharing of cell tracking data in the browser☆40Updated 3 weeks ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆102Updated this week
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- comseg☆24Updated 9 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆22Updated 7 months ago
- QuPath extension for Cellsparse☆19Updated 6 months ago
- Multiple-choice microscopy pipeline☆141Updated this week
- QuPath extension to interactively align images☆26Updated 3 months ago