fish-quant / rna2segLinks
rna2seg
☆14Updated 3 weeks ago
Alternatives and similar repositories for rna2seg
Users that are interested in rna2seg are comparing it to the libraries listed below
Sorting:
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- ☆33Updated last year
- Minimum Information about Tissue Imaging☆20Updated last year
- Piecewise alignment for layers of mosaics☆24Updated last week
- comseg☆20Updated 3 months ago
- Interactive visualization of spatial omics data☆58Updated this week
- ☆18Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆46Updated this week
- A pipeline to transform images into valuable analysis items☆13Updated this week
- ☆62Updated this week
- A relabeling tool for tiled segmentation with Dask☆16Updated 8 months ago
- QuPath extension to interactively align images☆23Updated this week
- Image registration (alignment) software for large microscopy images☆25Updated last year
- A plugin to visualise 3D spatial single cell omics☆22Updated last year
- Python API and Jupyter widget for Vitessce☆46Updated 2 weeks ago
- Framework for image and flow cytometry analysis☆26Updated 3 weeks ago
- ☆16Updated 2 weeks ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated 2 weeks ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated last month
- ☆12Updated last month
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 8 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- The official QuPath extension for InstanSeg☆17Updated 2 weeks ago
- Single-cell spatial proteomics analysis that makes you happy!☆28Updated this week
- ☆28Updated 7 months ago
- ☆17Updated last week
- Deep learning based spot detection for FISH images.☆21Updated 3 weeks ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated this week
- Segmentation error aware clustering for multiplexed imaging☆18Updated 4 months ago