Spatial omics analysis and visualization library
☆24May 22, 2026Updated this week
Alternatives and similar repositories for celldega
Users that are interested in celldega are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Nov 16, 2025Updated 6 months ago
- A performant scientific image visualization system.☆36Mar 20, 2026Updated 2 months ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 2 months ago
- ☆37Oct 22, 2025Updated 7 months ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆17May 18, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆28May 19, 2026Updated last week
- Package for the analysis of Transcripts outside segmented cells in ST data☆29May 18, 2026Updated last week
- Automatically annotate cell types, consistently across samples.☆21May 18, 2026Updated last week
- Python API and Jupyter widget for Vitessce☆66Updated this week
- ☆29Updated this week
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆27May 4, 2026Updated 3 weeks ago
- R API and htmlwidget for Vitessce☆45Aug 13, 2025Updated 9 months ago
- An introduction to OME-Zarr for big bioimaging data☆26May 14, 2026Updated last week
- A public MuSpAn page for community discussions and issue reporting.☆20May 7, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated 8 months ago
- Efficient data structures and IO for whole slide image analysis☆26May 14, 2026Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆43May 16, 2026Updated last week
- ☆27Oct 12, 2024Updated last year
- OME-TIFF IO in python☆28Apr 10, 2025Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆71Dec 2, 2025Updated 5 months ago
- ☆34Feb 5, 2025Updated last year
- ☆12May 29, 2024Updated last year
- Random Circuit Perturbation Method☆16Jun 29, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single-cell spatial omics analysis that makes you happy!☆62May 18, 2026Updated last week
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Information and resources to Quantitative Spatial Science research group☆12Mar 24, 2026Updated 2 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆90May 18, 2026Updated last week
- ☆16Sep 8, 2024Updated last year
- WebGL Clustergrammer JavaScript Library☆23Aug 21, 2023Updated 2 years ago
- A CodecPipeline for zarr-python backed by the zarrs Rust crate☆70May 19, 2026Updated last week
- Code used to benchmark Xenium☆83Apr 10, 2026Updated last month
- Simple Jupyter chat UI for LangChain☆10Jul 3, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆49Oct 22, 2025Updated 7 months ago
- Multiple-choice microscopy pipeline☆150Updated this week
- ☆31Sep 15, 2025Updated 8 months ago
- A simple native R reader for Zarr Arrays☆52Updated this week
- ☆24Updated this week
- wrapping z5 in R☆17Nov 25, 2020Updated 5 years ago
- serve Zarr datasets via HTTP☆31Jun 12, 2023Updated 2 years ago