Alternatives and similar repositories for celldega

Users that are interested in celldega are comparing it to the libraries listed below

• vitessce / vitessceR
  R API and htmlwidget for Vitessce
  ☆44Updated 5 months ago
• SydneyBioX / MoleculeExperiment
  ☆12Updated last year
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆30Updated last year
• theislab / troutpy
  Package for the analysis of Transcripts outside segmented cells in ST data
  ☆25Updated last week
• SpatialPathology / InSituPy
  ☆28Updated this week
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆34Updated last year
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆33Updated last week
• estellad / SpatialExperimentIO
  Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.
  ☆17Updated 4 months ago
• chaichontat / samui
  A performant scientific image visualization system.
  ☆36Updated 2 weeks ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆25Updated last year
• nf-core / spatialxe
  ☆24Updated last week
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆39Updated last month
• damienArnol / svca
  ☆13Updated 7 years ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆21Updated 3 months ago
• Sanofi-Public / spatialone-pipeline
  Spatial One
  ☆30Updated last year
• camlab-bioml / starling
  Segmentation error aware clustering for multiplexed imaging
  ☆19Updated last year
• saezlab / mistyR
  Multiview Intercellular SpaTial modeling framework
  ☆71Updated 2 weeks ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆65Updated last week
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated last week
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆46Updated 8 months ago
• wanglab-broad / CAST
  CAST package
  ☆42Updated last year
• almaan / eggplant
  ☆22Updated 3 years ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆34Updated last month
• p-gueguen / Spatial_transcriptomics_tools
  List of Spatial Transcriptomics related Tools organized per category
  ☆102Updated last week
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆66Updated 7 months ago
• satijalab / panhumanpy
  ☆23Updated 4 months ago
• bhuvad / SpaNorm
  R package for normalisation of spatial transcriptomics data
  ☆17Updated 2 weeks ago
• scverse / spatialdata-io
  ☆88Updated this week
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated last year
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆32Updated 2 years ago