Alternatives and similar repositories for celldega

Users that are interested in celldega are comparing it to the libraries listed below

• SydneyBioX / MoleculeExperiment
  ☆12Updated last year
• vitessce / vitessceR
  R API and htmlwidget for Vitessce
  ☆42Updated last month
• SpatialPathology / InSituPy
  ☆18Updated this week
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆30Updated 10 months ago
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆31Updated last month
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆28Updated last year
• damienArnol / svca
  ☆13Updated 6 years ago
• estellad / SpatialExperimentIO
  Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.
  ☆16Updated 2 weeks ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆24Updated last year
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆35Updated this week
• Feanor007 / MESA
  A python package for Multiomics and Ecological Spatial Analysis (MESA)
  ☆21Updated 5 months ago
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated last year
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆65Updated 3 months ago
• HiDiHlabs / ssam
  ☆27Updated 11 months ago
• almaan / eggplant
  ☆22Updated 3 years ago
• saezlab / mistyR
  Multiview Intercellular SpaTial modeling framework
  ☆68Updated 3 months ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 9 months ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆21Updated 8 months ago
• wanglab-broad / CAST
  CAST package
  ☆40Updated 11 months ago
• 10XGenomics / janesick_nature_comms_2023_companion
  Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…
  ☆26Updated last year
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆40Updated 4 months ago
• chaichontat / samui
  A performant scientific image visualization system.
  ☆36Updated 2 weeks ago
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆35Updated last week
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆56Updated last week
• Sanofi-Public / spatialone-pipeline
  Spatial One
  ☆28Updated 11 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆61Updated last month
• JEFworks-Lab / MERINGUE
  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…
  ☆80Updated 3 years ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆44Updated this week
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆26Updated 9 months ago
• Mr-Milk / SpatialTis
  Spatial analysis toolkit for single cell multiplexed tissue data
  ☆30Updated last year