Spatial and multiomic visualization and analysis library
☆60Sep 22, 2026Updated this week
Alternatives and similar repositories for celldega
Users that are interested in celldega are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆31Updated this week
- Single-cell spatial omics analysis that makes you happy!☆75Updated this week
- Python API and Jupyter widget for Vitessce☆67Updated this week
- Package for the analysis of Transcripts outside segmented cells in ST data☆31Updated this week
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Multi-Dimensional Visualization (MDV) is an open-source toolkit for analyzing and visualizing spatial and molecular datasets. Code licens…☆39Updated this week
- A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless …☆25Updated this week
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆32Sep 15, 2026Updated last week
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated 2 months ago
- ☆20Sep 17, 2026Updated last week
- ☆17Updated this week
- Automatically annotate cell types, consistently across samples.☆29Updated this week
- R API and htmlwidget for Vitessce☆46Aug 13, 2025Updated last year
- A performant scientific image visualization system.☆36Aug 5, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Agglomerative hierarchical clustering in JavaScript☆19Dec 17, 2024Updated last year
- serve Zarr datasets via HTTP☆32Jun 12, 2023Updated 3 years ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆70Updated this week
- A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data☆46Sep 11, 2026Updated 2 weeks ago
- Pareto Task Inference in Python☆23Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆81Aug 22, 2026Updated last month
- An introduction to OME-Zarr for big bioimaging data☆28Sep 1, 2026Updated 3 weeks ago
- Facilitating the use of Deep Visual Proteomics☆17Sep 16, 2026Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A plugin for exporting RDF from OMERO☆16Feb 27, 2026Updated 6 months ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 6 months ago
- Interactive visualization of spatial omics data☆91Sep 8, 2026Updated 2 weeks ago
- ☆36Oct 22, 2025Updated 11 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆160Sep 18, 2026Updated last week
- GPU-accelerated RCTD for spatial transcriptomics☆58Updated this week
- Multiple-choice microscopy pipeline☆156Sep 14, 2026Updated last week
- Open-source data management for multimodal AI. Query, trace, and govern with a lineage-native, format-agnostic lakehouse for agents and t…☆368Updated this week
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆21Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Snakemake pipeline for Xenium data analysis.☆28Jul 22, 2026Updated 2 months ago
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆39Jul 7, 2026Updated 2 months ago
- A public MuSpAn page for community discussions and issue reporting.☆25Sep 2, 2026Updated 3 weeks ago
- Biology-centered data-driven quality control for scRNA-seq☆21May 22, 2023Updated 3 years ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Aug 24, 2026Updated last month
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Jul 7, 2026Updated 2 months ago
- ☆21Aug 24, 2026Updated last month