☆31Oct 1, 2026Updated last week
Alternatives and similar repositories for InSituPy
Users that are interested in InSituPy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spatial and multiomic visualization and analysis library☆65Updated this week
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated 2 months ago
- ☆20Sep 17, 2026Updated 3 weeks ago
- A public MuSpAn page for community discussions and issue reporting.☆25Sep 2, 2026Updated last month
- Package for the analysis of Transcripts outside segmented cells in ST data☆31Sep 28, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Interactive visualization of spatial omics data☆91Sep 8, 2026Updated last month
- GNN-based cell segmentation of spatial transcriptomics data☆27Updated this week
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆39Updated this week
- TACCO: Transfer of Annotations to Cells and their COmbinations☆71Apr 21, 2026Updated 5 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 10 months ago
- Single-cell spatial omics analysis that makes you happy!☆75Updated this week
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated 2 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Sep 28, 2026Updated last week
- ☆18Sep 30, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An introduction to OME-Zarr for big bioimaging data☆28Oct 1, 2026Updated last week
- Python API and Jupyter widget for Vitessce☆67Sep 22, 2026Updated 2 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 10 months ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆14Sep 1, 2026Updated last month
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆81Aug 22, 2026Updated last month
- Differential spatial enrichment across conditions☆30Jul 14, 2026Updated 2 months ago
- Efficient data structures and IO for whole slide image analysis☆33Oct 1, 2026Updated last week
- R package for normalisation of spatial transcriptomics data☆20Sep 29, 2026Updated last week
- Robust and scalable single-cell signature scoring☆29Sep 22, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An open and interoperable data framework for spatial omics data☆399Updated this week
- ☆37Oct 2, 2026Updated last week
- Static plotting for spatialdata☆86Sep 28, 2026Updated last week
- Automatically annotate cell types, consistently across samples.☆30Updated this week
- Profile purification of single-cell spatial transcriptomics data☆61Jun 29, 2026Updated 3 months ago
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Oct 1, 2026Updated last week
- A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless …☆25Updated this week
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆295Sep 15, 2026Updated 3 weeks ago
- Facilitating the use of Deep Visual Proteomics☆18Sep 16, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆26Jul 15, 2026Updated 2 months ago
- Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction☆38Sep 21, 2026Updated 2 weeks ago
- A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data☆46Sep 11, 2026Updated 3 weeks ago
- serve Zarr datasets via HTTP☆32Jun 12, 2023Updated 3 years ago
- Data-driven signal detection for unbiased scRNA-seq data analysis☆26Jan 22, 2026Updated 8 months ago
- ☆67Sep 9, 2026Updated 3 weeks ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year