SpatialPathology / InSituPyLinks
☆27Updated last week
Alternatives and similar repositories for InSituPy
Users that are interested in InSituPy are comparing it to the libraries listed below
Sorting:
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- Spatial omics analysis and visualization library☆20Updated this week
- Segmentation error aware clustering for multiplexed imaging☆19Updated 9 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated 3 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated last year
- ☆56Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆139Updated last week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆89Updated last year
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆27Updated last year
- ☆73Updated last week
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆21Updated 6 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 3 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆44Updated 3 weeks ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆56Updated this week
- ☆38Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆39Updated 7 months ago
- ☆27Updated last year
- Join subcellular Visium HD bins into cells☆126Updated this week
- ☆43Updated 6 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆77Updated 2 weeks ago
- Single-cell spatial proteomics analysis that makes you happy!☆41Updated last week
- ☆22Updated this week
- A public MuSpAn page for community discussions and issue reporting.☆14Updated last week
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆81Updated this week
- Code used to benchmark Xenium☆69Updated last year
- ☆49Updated 4 months ago
- CAST package☆40Updated 11 months ago
- ☆50Updated 2 weeks ago