Alternatives and similar repositories for ipyigv

Users that are interested in ipyigv are comparing it to the libraries listed below

• Zsailer / phylopandas
  Pandas DataFrames for phylogenetics
  ☆74Updated 4 years ago
• dmnfarrell / pybioviz
  bioinformatics visualization tools with pyviz/bokeh
  ☆20Updated 2 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 3 months ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 10 months ago
• Edinburgh-Genome-Foundry / genome_collector
  Easily download genomes and build BLAST/Bowtie indexes in Python
  ☆22Updated 3 years ago
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated 5 months ago
• pirl-unc / mhcgnomes
  Parsing MHC nomenclature in the wild
  ☆18Updated 7 months ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated 2 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• schlegelp / catheat
  Plot categorical heatmaps with seaborn
  ☆18Updated 3 years ago
• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆69Updated last year
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆32Updated last month
• adrianveres / polo
  Python Optimal Leaf Ordering for Hierarchical Clustering
  ☆21Updated 8 years ago
• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆35Updated 2 years ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆60Updated 2 weeks ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• endrebak / poranges
  pyranges/bioframe for polars
  ☆18Updated 2 years ago
• laminlabs / nbproject
  Light-weight Jupyter notebook tracker.
  ☆34Updated 5 months ago
• Ad115 / EnsemblRest
  A Python interface to the Ensembl REST APIs, biological data at your fingertips.
  ☆12Updated last year
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆42Updated last week
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆25Updated last week
• dpryan79 / Misc
  Misc. utilities
  ☆11Updated 6 years ago
• goodwright / nextflow.py
  Python wrapper around Nextflow.
  ☆60Updated 2 months ago
• nextflow-io / nf-hello
  Nextflow plugin implementation skeleton
  ☆11Updated last month
• WarrenWeckesser / heatmapcluster
  A python library for generating a clustered heatmap with dendrograms.
  ☆34Updated 3 years ago
• nextflow-io / hyperopt
  Nextflow pipeline for hyperparameter optimization of machine learning models
  ☆24Updated last year
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 5 years ago
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆59Updated 3 years ago
• Marsilea-viz / legendkit
  Legend made easy for matplotlib
  ☆31Updated 4 months ago
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 7 years ago