Alternatives and similar repositories for ipyigv

Users that are interested in ipyigv are comparing it to the libraries listed below

• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 5 months ago
• endrebak / poranges
  pyranges/bioframe for polars
  ☆18Updated last year
• dmnfarrell / pybioviz
  bioinformatics visualization tools with pyviz/bokeh
  ☆20Updated last year
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated 3 weeks ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 9 months ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆35Updated last week
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆59Updated last month
• laminlabs / nbproject
  Light-weight Jupyter notebook tracker.
  ☆34Updated last month
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆26Updated last week
• knutdrand / bionumpy
  ☆9Updated last year
• sgkit-dev / vcztools
  Partial reimplementation of bcftools for VCF Zarr
  ☆14Updated this week
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆33Updated this week
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 6 years ago
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆21Updated last week
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆38Updated 6 months ago
• Zsailer / phylopandas
  Pandas DataFrames for phylogenetics
  ☆73Updated 3 years ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆26Updated 2 years ago
• higlass / scipy19
  Slides and demos from our SciPyConf 2019 talk
  ☆13Updated 3 years ago
• schlegelp / catheat
  Plot categorical heatmaps with seaborn
  ☆18Updated 2 years ago
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆21Updated 4 years ago
• krassowski / nbpipeline
  Snakemake-like pipeline manager for reproducible Jupyter Notebooks
  ☆17Updated 3 years ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆14Updated last month
• Marsilea-viz / legendkit
  Legend made easy for matplotlib
  ☆28Updated last week
• theislab / batchglm
  Fit generalized linear models in python.
  ☆27Updated 2 years ago
• Snakemake-Profiles / pbs-torque
  ☆16Updated last year
• hawkjo / SDRranger
  ☆10Updated 4 months ago
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆15Updated 2 years ago
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆14Updated 4 years ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated 3 weeks ago