ShobiStassen / PARCLinks
☆43Updated last year
Alternatives and similar repositories for PARC
Users that are interested in PARC are comparing it to the libraries listed below
Sorting:
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆64Updated 3 weeks ago
- ☆22Updated 5 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 4 months ago
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 3 months ago
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆25Updated last year
- Identification of spatial homogeneous regions☆21Updated 2 months ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- Information-based dimensionality reduction☆29Updated last year
- Multi-omics factor analysis v2☆54Updated 2 months ago
- ☆29Updated last year
- An implementation of MNN (Mutual Nearest Neighbors) correct in python.☆76Updated 2 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆33Updated 3 weeks ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated last month
- Package for the analysis of Transcripts outside segmented cells in ST data☆24Updated last week
- Tools to handle IMC data☆24Updated 3 years ago
- ☆22Updated 3 years ago
- Single-cell Hierarchical Poisson Factorization☆74Updated 3 years ago
- ☆48Updated last week
- ☆48Updated 7 years ago
- An R package for performing cell typing in SMI and other single cell data☆45Updated 7 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆77Updated 10 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Updated 3 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆110Updated last month
- .h5mu files interface for Seurat☆32Updated 2 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- Multi-resolution Variational Inference☆22Updated 3 weeks ago
- Automated cell filtering for single-cell RNA sequencing data☆25Updated 2 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Updated 3 months ago