Alternatives and similar repositories for PARC:

Users that are interested in PARC are comparing it to the libraries listed below

• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆53Updated 2 weeks ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆44Updated 5 months ago
• theislab / interactive_plotting
  ☆21Updated 4 years ago
• jfnavarro / st_analysis
  A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
  ☆18Updated 3 years ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆32Updated 3 weeks ago
• almaan / eggplant
  ☆21Updated 2 years ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆26Updated 6 months ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆52Updated 7 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆35Updated 4 months ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆28Updated 4 months ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆27Updated 6 months ago
• JCVenterInstitute / NSForest
  A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…
  ☆61Updated last week
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆22Updated 2 weeks ago
• lilab-bcb / harmony-pytorch
  ☆51Updated 2 weeks ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆29Updated 4 months ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆64Updated last month
• dpeerlab / wishbone
  Wishbone is an algorithm to align cells along developmental trajectories with branches
  ☆18Updated 4 years ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆30Updated 11 months ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated last year
• bioFAM / mofax
  Work with trained factor models in Python
  ☆31Updated 5 months ago
• maggiecrow / MetaNeighbor
  ☆50Updated 7 years ago
• dissatisfaction-ai / scHierarchy
  A toolking for cell type hierarchies: marker selection & consistent classification
  ☆22Updated last year
• saketkc / pySCTransform
  Python package to perform normalization and variance-stabilization of single-cell data
  ☆23Updated this week
• forrest-lab / scMatch
  scMatch: a single-cell gene expression profile annotation tool using reference datasets
  ☆21Updated 4 years ago
• CamaraLab / STvEA
  Spatially-resolved Transcriptomics via Epitope Anchoring
  ☆18Updated last year
• vanheeringen-lab / scepia
  Single Cell Epigenome-based Inference of Activity
  ☆19Updated last year
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 2 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆48Updated last week
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆20Updated 3 months ago
• wanglab-broad / CAST
  CAST package
  ☆33Updated 5 months ago