☆45Aug 13, 2024Updated last year
Alternatives and similar repositories for PARC
Users that are interested in PARC are comparing it to the libraries listed below
Sorting:
- Python package for writing flow cytometry standard (.fcs) files☆11Nov 9, 2025Updated 3 months ago
- Fast phenograph, CyTOF☆26Aug 19, 2022Updated 3 years ago
- FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation …☆20Nov 4, 2025Updated 4 months ago
- Functions for handling RNA-seq files and formats as input and output for scrattch functions.☆11Aug 20, 2025Updated 6 months ago
- BEER: Batch EffEct Remover for single-cell data☆24Jan 9, 2025Updated last year
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- ☆13Sep 30, 2023Updated 2 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 3 years ago
- Core utilities for single-cell RNA-seq☆12Apr 13, 2025Updated 10 months ago
- Official implementation of our work: "Automated Identification of Cell Populations in Flow Cytometry Data with Transformers"☆15Jun 30, 2023Updated 2 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- ☆12Sep 4, 2022Updated 3 years ago
- An Fast variant calling tool to detection germline and somatic variants☆11Feb 21, 2026Updated last week
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 5 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- Cell type purification by single-cell transcriptome-trained sorting☆14Jul 8, 2019Updated 6 years ago
- MRtree R implementation☆13Mar 1, 2023Updated 3 years ago
- An implementation of MNN (Mutual Nearest Neighbors) correct in python.☆77Jan 9, 2023Updated 3 years ago
- Quasilinear data representations for single-cell omics data analysis☆43May 4, 2023Updated 2 years ago
- This is a variation of the k-means clustering that produces equally sized clusters.☆10Nov 28, 2015Updated 10 years ago
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- Just a python fasta/q parser based on kseq.h☆14Jul 13, 2020Updated 5 years ago
- Private, Modular, Publicly-Available Genome Interpretation Engine☆20Aug 3, 2016Updated 9 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Apr 1, 2018Updated 7 years ago
- ☆38Mar 24, 2023Updated 2 years ago
- Supervised Adversarial Alignment of Single-Cell RNA-seq Data☆31Feb 6, 2020Updated 6 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated last year
- ☆19Apr 14, 2024Updated last year
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Sep 17, 2025Updated 5 months ago
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 2 years ago
- ☆18Mar 15, 2017Updated 8 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 3 years ago
- A toolkit for NGS analysis with Python☆14Jan 18, 2023Updated 3 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- ☆19Jun 23, 2020Updated 5 years ago
- Implementation of the Leiden algorithm called by reticulate in R. (CRAN)☆42May 26, 2024Updated last year