Alternatives and similar repositories for PARC:

Users that are interested in PARC are comparing it to the libraries listed below

• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆51Updated 2 weeks ago
• jfnavarro / st_analysis
  A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
  ☆18Updated 3 years ago
• theislab / interactive_plotting
  ☆21Updated 4 years ago
• WangPeng-Lab / scGCO
  Single-cell Graph Cuts Optimization
  ☆16Updated 10 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆35Updated 3 months ago
• atarashansky / self-assembling-manifold
  The Self-Assembling-Manifold (SAM) algorithm.
  ☆41Updated 8 months ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated last year
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆25Updated 5 months ago
• BrainStOrmics / Spaco
  Spatially constrained color profiling for visualizing single-cell resolution spatial data
  ☆24Updated 6 months ago
• almaan / eggplant
  ☆21Updated 2 years ago
• dpeerlab / Harmony
  Harmony framework for connecting scRNA-seq data from discrete time points
  ☆46Updated 8 months ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated 10 months ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆20Updated 2 months ago
• rajewsky-lab / spacemake
  ☆41Updated this week
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆27Updated 6 months ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆28Updated 3 months ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆43Updated 5 months ago
• MacoskoLab / slideseq-tools
  Tools for analyzing Slide-seq data
  ☆31Updated last year
• BodenmillerGroup / imctools
  Tools to handle IMC data
  ☆23Updated 2 years ago
• JCVenterInstitute / FRmatch
  Cell type matching in single-cell RNA-sequencing data using FR-Match
  ☆19Updated 5 months ago
• JCVenterInstitute / NSForest
  A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…
  ☆60Updated this week
• dpeerlab / wishbone
  Wishbone is an algorithm to align cells along developmental trajectories with branches
  ☆18Updated 4 years ago
• jbergenstrahle / STUtility
  ☆47Updated 2 years ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆29Updated 4 months ago
• KenLauLab / dropkick
  Automated cell filtering for single-cell RNA sequencing data
  ☆24Updated last year
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 3 months ago
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆22Updated 2 weeks ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated 11 months ago
• Teichlab / gene2probe
  Pipeline for designing custom probes against human genes
  ☆16Updated 4 months ago
• saketkc / pySCTransform
  Python package to perform normalization and variance-stabilization of single-cell data
  ☆23Updated 2 years ago