Alternatives and similar repositories for pepmlm

Users that are interested in pepmlm are comparing it to the libraries listed below

• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆86Updated 4 months ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆91Updated 3 months ago
• Kuhlman-Lab / evopro
  ☆92Updated last month
• zhanghaicang / carbonmatrix_public
  ☆118Updated 5 months ago
• yehlincho / BoltzDesign1
  ☆225Updated 3 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆82Updated 4 months ago
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆164Updated last week
• levinthal / Pallatom
  ☆128Updated 6 months ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆110Updated last month
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆127Updated 3 weeks ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆61Updated 9 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆97Updated last year
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆113Updated last month
• varun-shanker / structural-evolution
  ☆116Updated last year
• SantiagoMille / germinal
  Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.
  ☆165Updated last week
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆89Updated 5 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆144Updated 3 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆158Updated this week
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆68Updated 5 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆65Updated 3 months ago
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆84Updated last year
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆78Updated 3 months ago
• ELELAB / RosettaDDGPrediction
  ☆83Updated last week
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆56Updated 4 months ago
• ikalvet / heme_binder_diffusion
  ☆142Updated 4 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆74Updated last month
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆211Updated 4 months ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆96Updated 7 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆125Updated 2 weeks ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago