bjing2016 / alphaflowLinks
AlphaFold Meets Flow Matching for Generating Protein Ensembles
☆463Updated 6 months ago
Alternatives and similar repositories for alphaflow
Users that are interested in alphaflow are comparing it to the libraries listed below
Sorting:
- Fast protein backbone generation with SE(3) flow matching.☆275Updated last year
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆337Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆210Updated 5 months ago
- Public RFDiffusionAA repo☆422Updated last year
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆303Updated last year
- A Euclidean diffusion model for structure-based drug design.☆438Updated last month
- ☆413Updated 5 months ago
- EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein☆512Updated 5 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆193Updated last week
- Diffusion models of protein structure; trigonometry and attention are all you need!☆549Updated last year
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆250Updated 3 months ago
- Plausibility checks for generated molecule poses.☆307Updated 3 weeks ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆392Updated 2 years ago
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆288Updated 2 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆316Updated 9 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆212Updated last year
- Protein Ligand INteraction Dataset and Evaluation Resource☆238Updated last month
- Awesome papers related to generative molecular modeling and design.☆328Updated 2 weeks ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆309Updated 6 months ago
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆245Updated last year
- DiffLinker: Equivariant 3D-Conditional Diffusion Model for Molecular Linker Design☆345Updated last year
- Official repository for the ProteinGym benchmarks☆336Updated last week
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆260Updated last year
- RoseTTAFold2 protein/nucleic acid complex prediction☆361Updated last year
- A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization. (Nature CommsChem)☆211Updated 2 months ago
- Protein hallucination and inpainting with RoseTTAFold☆263Updated 2 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆180Updated last year
- ☆336Updated 11 months ago
- User friendly and accurate binder design pipeline☆617Updated last week
- ☆188Updated last year