Profluent-Internships / MMDiff
Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
☆52Updated 4 months ago
Related projects: ⓘ
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆44Updated 10 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆46Updated 10 months ago
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆32Updated 2 months ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆23Updated 6 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆30Updated last week
- Learning to design protein-protein interactions with enhanced generalization (ICLR24)☆43Updated 3 weeks ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆30Updated 3 months ago
- Aligning protein generative models with experimental fitness☆63Updated 2 months ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆31Updated last month
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆27Updated 9 months ago
- Comprehensive benchmarking of protein-ligand structure generation methods (ICML 2024 AI4Science)☆56Updated 2 weeks ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆65Updated 6 months ago
- Structure-conditioned masked language modeling for protein sequence design☆56Updated 7 months ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆27Updated 2 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆50Updated 3 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆30Updated 3 months ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆84Updated last month
- ☆29Updated this week
- ☆12Updated 2 months ago
- In-silico design pipeline for evaluating protein structure diffusion models.☆15Updated 2 months ago
- Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.☆32Updated 3 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆49Updated 7 months ago
- ☆73Updated 4 months ago
- A PyTorch implementation of Geometry-Complete SE(3)-Equivariant Perceptron Networks (GCPNets)☆39Updated 4 months ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆26Updated 4 months ago
- ☆25Updated 2 months ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆44Updated last year
- dMaSIF implementation for google colab☆29Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆65Updated 2 months ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆66Updated last year