Profluent-Internships / MMDiff
Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
☆56Updated 10 months ago
Alternatives and similar repositories for MMDiff:
Users that are interested in MMDiff are comparing it to the libraries listed below
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆50Updated last month
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆46Updated last year
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆47Updated 2 months ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆44Updated 3 weeks ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆37Updated 9 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆57Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆38Updated 3 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆33Updated 9 months ago
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆57Updated 9 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆88Updated 7 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆66Updated 4 months ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆40Updated this week
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆55Updated this week
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆23Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆71Updated last year
- Adapting protein language models for structure-conditioned design☆37Updated 7 months ago
- pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction☆21Updated 10 months ago
- ☆29Updated 4 months ago
- dMaSIF implementation for google colab☆31Updated last year
- ☆62Updated 3 months ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆48Updated last year
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆25Updated last year
- ☆26Updated 5 months ago
- Official repository of EnzymeFlow☆81Updated 3 months ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆39Updated 4 months ago