Profluent-Internships / MMDiff
Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
☆57Updated last year
Alternatives and similar repositories for MMDiff:
Users that are interested in MMDiff are comparing it to the libraries listed below
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆55Updated 2 weeks ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 3 months ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆51Updated 2 months ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆48Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆34Updated last month
- A standardized protein design benchmark for motif-scaffolding problems☆57Updated this week
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆58Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆38Updated 11 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆41Updated 5 months ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆43Updated last month
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆75Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆46Updated 4 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆32Updated 11 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆74Updated 10 months ago
- protein structure generation with sparse all-atom denoising models☆30Updated last week
- A geometry-complete SE(3)-equivariant perceptron network (GCPNet) for 3D graphs. (Bioinformatics)☆45Updated 2 weeks ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆96Updated 9 months ago
- ☆66Updated last month
- ☆87Updated 6 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆93Updated 9 months ago
- ☆38Updated 2 months ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆71Updated 6 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆68Updated 2 weeks ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆70Updated 6 months ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆35Updated last year
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Updated last year
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆37Updated 9 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆104Updated 2 months ago