ml4bio / RiboDiffusionLinks
ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
☆51Updated last year
Alternatives and similar repositories for RiboDiffusion
Users that are interested in RiboDiffusion are comparing it to the libraries listed below
Sorting:
- ☆42Updated 2 years ago
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆42Updated last year
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆79Updated 7 months ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated 2 years ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆27Updated 2 years ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆122Updated 10 months ago
- Pretrainable geometric graph neural network for antibody affinity maturation☆70Updated 9 months ago
- Code for humanization of antibody and nanobody☆67Updated 4 months ago
- ☆73Updated 5 years ago
- ☆76Updated 10 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆83Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- ☆84Updated 7 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆90Updated 6 months ago
- ☆61Updated last year
- Aligning protein generative models with experimental fitness☆114Updated 2 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- ☆132Updated 6 months ago
- Official repository of EnzymeFlow☆97Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆40Updated last year
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆71Updated last week
- ☆90Updated 3 years ago
- ☆77Updated 2 years ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆78Updated last year
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆80Updated 4 months ago
- Official repository of ReactZyme☆37Updated last year
- Evaluating Protein Binding Interfaces with Transformer Networks☆46Updated 2 years ago
- ☆54Updated last year