ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
☆56Nov 17, 2024Updated last year
Alternatives and similar repositories for RiboDiffusion
Users that are interested in RiboDiffusion are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆85Aug 11, 2024Updated 2 years ago
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆317Dec 16, 2025Updated 8 months ago
- ☆35Jan 14, 2025Updated last year
- Nature Computational Science: RhoDesign is a structure-to-sequence model for RNA design.☆65Nov 8, 2024Updated last year
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆103Oct 15, 2025Updated 10 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆16Aug 18, 2026Updated last week
- A deep learning method for the prediction of internal ribosome entry sites (IRES) of circRNAs☆17Jul 6, 2025Updated last year
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆245May 29, 2025Updated last year
- An analysis of a new experimentally-derived nucleic acid binding chemical library☆33Jan 27, 2023Updated 3 years ago
- Code associated with the publication 'Generative and predictive neural networks for the design of functional RNA molecules'☆15Apr 8, 2025Updated last year
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆71Jun 16, 2026Updated 2 months ago
- RiboNucleic Acid (RNA) Language Model☆173May 4, 2026Updated 3 months ago
- ☆20Oct 18, 2024Updated last year
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated 2 years ago
- SE(3) diffusion models for generating CDR loops☆10Feb 6, 2024Updated 2 years ago
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆25Aug 6, 2026Updated 3 weeks ago
- Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆70Jul 22, 2024Updated 2 years ago
- Code repository of "Deep generative design of RNA family sequences"☆44Apr 8, 2026Updated 4 months ago
- ☆80Feb 26, 2024Updated 2 years ago
- ☆22Dec 20, 2024Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆69May 8, 2026Updated 3 months ago
- ☆35Dec 15, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Geometry-aware protein binding site predictor☆30Aug 29, 2024Updated 2 years ago
- ☆43Oct 1, 2023Updated 2 years ago
- MTAE-based 5UTR design model☆11Jan 23, 2024Updated 2 years ago
- ☆233Mar 2, 2024Updated 2 years ago
- ☆78Aug 23, 2023Updated 3 years ago
- ☆13May 24, 2026Updated 3 months ago
- ☆15May 29, 2024Updated 2 years ago
- Learning to Generate UTR Sequences for Optimized Ribosome Load and Gene Expression☆25May 11, 2025Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆111Nov 20, 2025Updated 9 months ago
- ☆14Jun 5, 2024Updated 2 years ago
- Clustering tool for biomolecular structural ensembles and data in general.☆10Aug 24, 2020Updated 6 years ago
- ☆84Jun 29, 2025Updated last year
- ☆17Dec 10, 2025Updated 8 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆60Apr 13, 2026Updated 4 months ago
- RNA Multiple Sequence Alignment☆53Jul 20, 2023Updated 3 years ago