ml4bio / RiboDiffusionLinks
ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
☆52Updated 10 months ago
Alternatives and similar repositories for RiboDiffusion
Users that are interested in RiboDiffusion are comparing it to the libraries listed below
Sorting:
- ☆41Updated 2 years ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated last year
- Code for humanization of antibody and nanobody☆56Updated last month
- Aligning protein generative models with experimental fitness☆107Updated 2 months ago
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆40Updated last year
- ☆80Updated 4 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆119Updated 7 months ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆81Updated last year
- Pretrainable geometric graph neural network for antibody affinity maturation☆63Updated 6 months ago
- ☆76Updated 7 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆68Updated 3 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- ☆76Updated 2 years ago
- ☆61Updated last year
- ☆86Updated 3 years ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆76Updated 4 months ago
- ☆72Updated 5 years ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆27Updated 2 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 4 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆69Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆119Updated 6 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆43Updated 10 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆74Updated last month
- open source code for Tencent tFold☆113Updated 6 months ago
- ☆50Updated last year
- Official implementation of "Learning the language of protein structures"☆39Updated 3 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Updated last year
- ☆53Updated last year