biolists / biodiffusion
A list of manuscripts/tools using diffusion on biological enttieis
☆96Updated 11 months ago
Related projects: ⓘ
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆117Updated last year
- ☆104Updated 6 months ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆82Updated this week
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- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. https…☆60Updated this week
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆184Updated 8 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆161Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆165Updated 4 months ago
- Dataset and package for working with protein-protein interactions in 3D☆81Updated last month
- Diffusion-based all-atom protein generative model.☆153Updated 2 months ago
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- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆110Updated 2 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆91Updated last year
- Pose checks for 3D Structure-based Drug Design methods☆69Updated 3 weeks ago
- Protein Design with Guided Discrete Diffusion☆107Updated 6 months ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆84Updated last month
- gRNAde: Geometric Deep Learning for 3D RNA inverse design☆145Updated 3 months ago
- ☆55Updated 5 months ago
- Protein structure datasets for machine learning.☆94Updated 2 months ago
- Protein-ligand structure prediction☆183Updated last month
- Fast protein backbone generation with SE(3) flow matching.☆206Updated 2 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆81Updated last month
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆191Updated 5 months ago
- ☆73Updated 4 months ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆97Updated 11 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆65Updated 2 months ago
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- Directed evolution of proteins in sequence space with gradients☆59Updated last month
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆65Updated 6 months ago
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