biolists / biodiffusionLinks
A list of manuscripts/tools using diffusion on biological enttieis
☆98Updated 2 years ago
Alternatives and similar repositories for biodiffusion
Users that are interested in biodiffusion are comparing it to the libraries listed below
Sorting:
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆126Updated 2 years ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆145Updated 7 months ago
- composite-objective protein design☆121Updated this week
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆84Updated last month
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Updated 2 years ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆139Updated 2 weeks ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆159Updated 2 years ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆225Updated last year
- Aligning protein generative models with experimental fitness☆113Updated last month
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆142Updated last year
- Dataset and package for working with protein-protein interactions in 3D☆98Updated 7 months ago
- ☆65Updated 2 years ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆103Updated last year
- Protein structure datasets for machine learning.☆112Updated 7 months ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆183Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆115Updated 6 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆80Updated last year
- Improved antibody structure-based design using inverse folding☆144Updated 3 months ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆55Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 6 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆109Updated last year
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆88Updated 2 years ago
- ☆114Updated 3 years ago
- Protein Design with Guided Discrete Diffusion☆138Updated last year
- Pose checks for 3D Structure-based Drug Design methods☆92Updated last year
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆57Updated last year
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆73Updated 2 years ago
- ☆107Updated 2 years ago
- ☆34Updated 7 months ago