biolists / biodiffusionLinks
A list of manuscripts/tools using diffusion on biological enttieis
☆97Updated 2 years ago
Alternatives and similar repositories for biodiffusion
Users that are interested in biodiffusion are comparing it to the libraries listed below
Sorting:
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆144Updated 7 months ago
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆125Updated 2 years ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆134Updated 2 weeks ago
- composite-objective protein design☆117Updated 2 weeks ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆81Updated last month
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆159Updated 2 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆183Updated last year
- ☆58Updated last year
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆223Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆108Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆115Updated 5 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆57Updated last year
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆140Updated last year
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆177Updated 2 years ago
- Dataset and package for working with protein-protein interactions in 3D☆96Updated 6 months ago
- A generalized computational framework for biomolecular modeling.☆321Updated 3 weeks ago
- ☆114Updated 2 years ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆103Updated last year
- Protein structure datasets for machine learning.☆112Updated 6 months ago
- ☆65Updated 2 years ago
- Aligning protein generative models with experimental fitness☆111Updated last month
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆50Updated 2 months ago
- Official repository of EnzymeFlow☆95Updated 11 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆80Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆84Updated last year
- Improved antibody structure-based design using inverse folding☆144Updated 2 months ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆88Updated last year
- Protein Design with Guided Discrete Diffusion☆137Updated last year
- ☆126Updated 5 months ago