Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design
☆93Oct 15, 2025Updated 4 months ago
Alternatives and similar repositories for rna-backbone-design
Users that are interested in rna-backbone-design are comparing it to the libraries listed below
Sorting:
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆287Dec 16, 2025Updated 2 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆82Aug 11, 2024Updated last year
- Geometric Algebra Flow Matching (GAFL) for Protein Backbone Generation☆17Oct 31, 2025Updated 4 months ago
- Nature Computational Science: RhoDesign is a structure-to-sequence model for RNA design.☆55Nov 8, 2024Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated last year
- Metrics to evaluate distributional coverage of generative models of protein structures.☆20Aug 13, 2025Updated 6 months ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆109Apr 16, 2025Updated 10 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆236Jul 24, 2025Updated 7 months ago
- Fast protein backbone generation with SE(3) flow matching.☆315Jul 19, 2024Updated last year
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆58Jan 22, 2024Updated 2 years ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆125Feb 26, 2025Updated last year
- ☆135Jun 3, 2025Updated 9 months ago
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆76Sep 12, 2024Updated last year
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆516Oct 21, 2025Updated 4 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆414Jul 3, 2023Updated 2 years ago
- ☆216Mar 2, 2024Updated 2 years ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆61Jan 30, 2026Updated last month
- Protein Engineering via Exploration of an Energy Landscape☆106Feb 26, 2026Updated last week
- ☆57Jul 22, 2025Updated 7 months ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆104May 25, 2025Updated 9 months ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆52Nov 17, 2024Updated last year
- This repo contains the codes for our paper "Generalist Equivariant Transformer Towards 3D Molecular Interaction Learning" (ICML 2024).☆40Jul 4, 2025Updated 8 months ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆105Jul 30, 2024Updated last year
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆188Jun 24, 2024Updated last year
- PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets☆213Apr 15, 2025Updated 10 months ago
- MSA Transformer reproduction code☆91Oct 21, 2021Updated 4 years ago
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆26Mar 8, 2025Updated 11 months ago
- A Fast, Simplified Model for Molecular Generation with Improved Physical Quality☆26Oct 1, 2025Updated 5 months ago
- Mixed continous/categorical flow-matching model for de novo molecule generation.☆183Dec 19, 2025Updated 2 months ago
- A benchmark for 3D biomolecular structure prediction models☆69May 11, 2025Updated 9 months ago
- ☆131May 7, 2024Updated last year
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆275Dec 10, 2024Updated last year
- Diffusion-based all-atom protein generative model.☆232Aug 27, 2025Updated 6 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆129Nov 19, 2025Updated 3 months ago
- A list of manuscripts/tools using diffusion on biological enttieis☆98Oct 5, 2023Updated 2 years ago
- A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files☆12Apr 29, 2024Updated last year
- ☆13Feb 20, 2024Updated 2 years ago
- Codebase of the paper "Aligning Protein Conformation Ensemble Generation with Physical Feedback" (ICML 2025)☆16Jul 6, 2025Updated 7 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆65Feb 2, 2026Updated last month