Programs and documentation for the SAMSA pipeline, version 1.0
☆16Dec 16, 2019Updated 6 years ago
Alternatives and similar repositories for SAMSA
Users that are interested in SAMSA are comparing it to the libraries listed below
Sorting:
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 6 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Jul 24, 2015Updated 10 years ago
- Metagenomic binning suite☆29Sep 30, 2022Updated 3 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 4 years ago
- Emperor a tool for the analysis and visualization of large microbial ecology datasets☆54Jan 12, 2026Updated 2 months ago
- The MG-RAST pipeline☆25Nov 30, 2022Updated 3 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- Repository of script tools, examples, and contributed code for using the MG-RAST API☆25Mar 22, 2021Updated 4 years ago
- Stray has been renamed fido, development continues at jsilve24/fido☆23Jan 26, 2022Updated 4 years ago
- PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees☆14Apr 15, 2024Updated last year
- Alignment editor for Mac OS X☆29Aug 1, 2017Updated 8 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- ✅ PeopleBudget is an open-source tool for hosting participatory budgets elections at the local level.☆10Oct 4, 2022Updated 3 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Miscellaneous scripts that serve a stand-alone purpose that might be useful for others.☆26Apr 28, 2021Updated 4 years ago
- ☆12Oct 3, 2023Updated 2 years ago
- convert nucleic sequence in protein sequence☆19Feb 2, 2023Updated 3 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- ☆32Jan 4, 2025Updated last year
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 7 years ago
- ☆132Jul 9, 2023Updated 2 years ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago
- Public and free software API to tokenize or encrypt data.☆14Feb 28, 2026Updated 2 weeks ago
- This R package is used to calculate CO2 and CH4 gas fluxes measured with static chamber method. It provide a easy way to calculate multip…☆10May 20, 2021Updated 4 years ago
- Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions☆12Dec 18, 2025Updated 3 months ago
- Rapid and scalable homolog identification for bacterial genomes☆33Aug 27, 2019Updated 6 years ago
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Nov 24, 2015Updated 10 years ago
- waka waka☆18Mar 18, 2021Updated 5 years ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Updated this week
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- A QGIS plugin for creating CZML files☆13Feb 11, 2021Updated 5 years ago
- A component.io plugin for superagent that prefixes absolute URLs☆21Nov 13, 2015Updated 10 years ago
- A powerful Perl module for simulating the genome digestions by restriction enzymes☆14Sep 10, 2024Updated last year
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- ☆15May 16, 2019Updated 6 years ago