transcript / SAMSA
Programs and documentation for the SAMSA pipeline, version 1.0
☆15Updated 5 years ago
Alternatives and similar repositories for SAMSA:
Users that are interested in SAMSA are comparing it to the libraries listed below
- Merge transcriptome assemblies☆31Updated 8 years ago
- ☆23Updated 6 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Error correction for Oxford Nanopore data☆47Updated 3 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆37Updated last year
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- De novo Extraction of Strains from MetAgeNomes☆68Updated 4 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Software for nanopore data analysis☆30Updated 10 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- ☆17Updated 7 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated 11 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Hagfish - assess an assembly through creative use of coverage plots☆36Updated 12 years ago
- A list of weak Bacterial assemblies in GenBank☆18Updated 7 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Metagenomic binning suite☆29Updated 2 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 4 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆47Updated 3 years ago
- Workflow for detecting genome-wide horizontal gene transfers☆10Updated 6 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆47Updated 3 years ago
- ☆52Updated 3 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago