thomasp85 / PanVizLinks
D3 based visualisation for comparative genomics
☆14Updated 9 years ago
Alternatives and similar repositories for PanViz
Users that are interested in PanViz are comparing it to the libraries listed below
Sorting:
- Northern Arizona SNP Pipeline☆20Updated last year
- Genomic Assemblies Merger for NGS☆26Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 3 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 7 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Neptune: Genomic Signature Discovery☆21Updated last year
- De novo VIral Genome Annotator☆24Updated 3 weeks ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Updated 3 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last year
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 7 years ago
- ☆11Updated last year
- Nanopore Real-Time Analysis Tool☆17Updated last year
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated 2 years ago
- Nanopore read de-multiplexer☆13Updated 5 years ago
- Create your own PanViz visualizations☆21Updated 8 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Updated 9 years ago
- software to identify primers that can distinguish genomes☆20Updated last week
- C++ tools for NCBI taxonomy tasks☆12Updated 7 months ago
- PanGenomePipeline☆16Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 5 months ago
- Influenza genome analysis Nextflow workflow☆24Updated this week
- metagenome population recombination rate estimation pipeline☆12Updated 2 months ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Updated 7 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Updated 4 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated 2 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago