thomasp85 / PanViz
D3 based visualisation for comparative genomics
☆14Updated 8 years ago
Related projects ⓘ
Alternatives and complementary repositories for PanViz
- De novo VIral Genome Annotator☆21Updated 2 months ago
- ☆21Updated last year
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 5 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆21Updated 8 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆12Updated last month
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 4 months ago
- software to identify primers that can distinguish genomes☆20Updated this week
- Genomic Assemblies Merger for NGS☆26Updated last year
- Create your own PanViz visualizations☆19Updated 6 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 3 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated last year
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 2 years ago
- Nanopore read de-multiplexer☆13Updated 4 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Updated last year
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆20Updated 7 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆11Updated 2 months ago
- Tools for analyzing trees☆14Updated 11 months ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 5 years ago
- ☆15Updated 4 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Simulate mutations in genomes☆15Updated 4 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- C++ tools for NCBI taxonomy tasks☆11Updated 2 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆14Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆14Updated 2 years ago
- Formats Roary output for viewing in FriPan☆10Updated 6 years ago
- transposable element typing pipeline☆16Updated 8 months ago
- Hybrid Assembler for Plasmids☆10Updated 2 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago