Alternatives and similar repositories for PanViz

Users that are interested in PanViz are comparing it to the libraries listed below

• sanger-pathogens / panito
  Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
  ☆16Updated 6 years ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated last year
• TGenNorth / NASP
  Northern Arizona SNP Pipeline
  ☆20Updated last year
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆24Updated 2 years ago
• leoisl / bacterial_assembly_pipeline
  ☆11Updated last year
• KThorellGroup / BACTpipe
  BACTpipe: An assembly and annotation pipeline for bacterial genomics
  ☆20Updated 10 months ago
• CAMI-challenge / CAMITAX
  CAMITAX: Taxon labels for microbial genomes
  ☆30Updated last year
• zhaoc1 / nanoflow
  Bioinformatics pipeline for nanopore sequencing data
  ☆11Updated 6 years ago
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆35Updated 10 months ago
• phiweger / uv
  Finding prophage regions in bacterial genomes using brute force
  ☆21Updated 2 years ago
• phac-nml / neptune
  Neptune: Genomic Signature Discovery
  ☆20Updated 11 months ago
• vice87 / gam-ngs
  Genomic Assemblies Merger for NGS
  ☆26Updated last year
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated this week
• Microbiology / ccontigs
  Detect contigs of complete circular genomes
  ☆23Updated 6 years ago
• rpetit3 / pasty
  A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates
  ☆13Updated last year
• pg-space / panspace
  Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes
  ☆12Updated this week
• AliTVTeam / AliTV-perl-interface
  ☆11Updated 4 years ago
• sid-krish / rhometa
  metagenome population recombination rate estimation pipeline
  ☆12Updated this week
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated last year
• EvdH0 / poreFUME
  Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing
  ☆12Updated 8 years ago
• c2-d2 / disty
  Disty McMatrixface - compute a distance matrix from a core genome alignment file
  ☆14Updated 2 years ago
• Gardner-BinfLab / deltaBS
  Quantifying the significance of genetic variation using probabilistic profile-based methods.
  ☆19Updated 4 years ago
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 3 years ago
• stjacqrm / centroid
  tool to determine optimal refrerence genome given a set of fasta files
  ☆15Updated 2 years ago
• shenwei356 / ncbi_acc2gtdb_acc
  Mapping NCBI Genbank accession to GTDB accession
  ☆13Updated 4 years ago
• thomasp85 / PanVizGenerator
  Create your own PanViz visualizations
  ☆20Updated 7 years ago
• drpowell / FriPan
  Interactive, web tool for exploring pan-genome of bacterial strains
  ☆48Updated 2 years ago
• dhelekal / CaveDive
  ☆18Updated last year
• tatumdmortimer / core-genome-alignment
  Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.
  ☆19Updated 7 years ago
• pmenzel / taxonomy-tools
  C++ tools for NCBI taxonomy tasks
  ☆11Updated 4 months ago