Utility program for extracting sequences from a fasta/fastq file
☆35Dec 23, 2024Updated last year
Alternatives and similar repositories for pullseq
Users that are interested in pullseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple tool to verticalize text delimited files.☆37May 6, 2024Updated 2 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- ☆18Jul 9, 2018Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Jul 24, 2025Updated 10 months ago
- Go implementation of ntHash☆20Sep 16, 2021Updated 4 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Very very long reads, indeed☆13Apr 30, 2017Updated 9 years ago
- simple and not slow ORF caller☆23Apr 7, 2026Updated 2 months ago
- Histosketching Using Little Kmers☆57May 25, 2023Updated 3 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 10 months ago
- C++ wrapper to tabix indexer☆17Jun 27, 2025Updated 11 months ago
- Phinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project r…☆150Oct 27, 2021Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- Fast but inaccurate adapter trimmer for Illumina reads☆16Mar 17, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Nov 9, 2019Updated 6 years ago
- Finding putative exons and constructing splicegraphs using Trans-ABySS contigs☆11Nov 8, 2018Updated 7 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- DAS Tool☆173May 2, 2024Updated 2 years ago
- Identifying repeats in high-throughput sequencing data☆16Apr 12, 2024Updated 2 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆50Mar 25, 2026Updated 2 months ago
- Prophage Activity Estimator☆33May 30, 2024Updated 2 years ago
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Feb 14, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Sep 9, 2025Updated 9 months ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆10Apr 29, 2021Updated 5 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Feb 25, 2023Updated 3 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- AMBER: Assessment of Metagenome BinnERs☆33Apr 14, 2026Updated last month
- a Sequencing Quality Assessment Tool☆17Jul 28, 2022Updated 3 years ago