bcthomas / pullseq
Utility program for extracting sequences from a fasta/fastq file
☆36Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for pullseq
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated last year
- Detect contigs of complete circular genomes☆21Updated 5 years ago
- Find Unique genomic Regions☆29Updated this week
- Locus and lineage tests for bacterial GWAS☆30Updated 7 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- ☆21Updated last year
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆17Updated 3 years ago
- A set of programs for the taxonomic analysis of genetic sequences☆12Updated last year
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 9 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆28Updated 6 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- strain-level analysis tools☆33Updated last month
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆34Updated 3 weeks ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 4 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 4 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated last year
- A method of assessing sequence complexity based on kmer frequencies☆28Updated 6 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago