bcthomas / pullseq
Utility program for extracting sequences from a fasta/fastq file
☆36Updated 4 months ago
Alternatives and similar repositories for pullseq:
Users that are interested in pullseq are comparing it to the libraries listed below
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Find Unique genomic Regions☆29Updated last month
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- ☆22Updated 2 years ago
- Convert genbank files to a swath of other formats☆18Updated last year
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Detect contigs of complete circular genomes☆23Updated 5 years ago
- strain-level analysis tools☆36Updated 6 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 9 months ago
- ☆19Updated 8 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 7 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- MAG Circularization Method☆33Updated 2 years ago
- De novo VIral Genome Annotator☆21Updated 7 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 8 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated 4 months ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- A gene-targeted assembler tool☆19Updated 7 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago