bcthomas / pullseqLinks
Utility program for extracting sequences from a fasta/fastq file
☆35Updated last year
Alternatives and similar repositories for pullseq
Users that are interested in pullseq are comparing it to the libraries listed below
Sorting:
- Find Unique genomic Regions☆32Updated this week
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Locus and lineage tests for bacterial GWAS☆28Updated 8 years ago
- Validate and edit small eukaryotic genome assemblies☆33Updated 2 years ago
- transposable element typing pipeline☆19Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- De novo VIral Genome Annotator☆23Updated this week
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 5 months ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated 2 years ago
- blast, shmlast☆21Updated 5 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Updated 3 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 4 months ago
- Convert genbank files to a swath of other formats☆24Updated last week
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Read contamination removal☆25Updated last year
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 3 months ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last year
- Reference genome quality scores☆21Updated 5 years ago