thegenemyers / DAZZ_DBLinks
The Dazzler Data Base
☆36Updated 11 months ago
Alternatives and similar repositories for DAZZ_DB
Users that are interested in DAZZ_DB are comparing it to the libraries listed below
Sorting:
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 7 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆52Updated 7 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Updated 3 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 8 years ago
- k-mer counting software☆39Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 4 months ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- ⛓ Correct misassemblies using linked AND long reads☆63Updated 2 years ago
- RUFUS k-mer based genomic variant detection☆54Updated 3 weeks ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated 2 years ago
- Assembly by Reduced Complexity (ARC)☆42Updated 9 years ago
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago