bcgsc / ntHitsLinks
Identifying repeats in high-throughput sequencing data
☆16Updated last year
Alternatives and similar repositories for ntHits
Users that are interested in ntHits are comparing it to the libraries listed below
Sorting:
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- genomic alignment similarity search tool☆18Updated last month
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆28Updated 2 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- scripts to parse IrysView output☆11Updated 10 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆15Updated 4 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- ☆28Updated 2 months ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Find Unique genomic Regions☆30Updated 2 months ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 4 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Bayesian reconstruction of ancient DNA fragments☆28Updated 10 months ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 8 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- ☆20Updated last year