bcgsc / ntHitsLinks
Identifying repeats in high-throughput sequencing data
☆16Updated last year
Alternatives and similar repositories for ntHits
Users that are interested in ntHits are comparing it to the libraries listed below
Sorting:
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- ☆21Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆32Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- transposable element typing pipeline☆19Updated last year
- extract MSAs from genome variation graphs☆33Updated 5 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 weeks ago
- Tool for visualising assemblies.☆17Updated 10 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 weeks ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- scripts to parse IrysView output☆11Updated 10 years ago
- This repository is deprecated, please use the link to the right.☆23Updated 6 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆28Updated 5 months ago
- Find Unique genomic Regions☆30Updated 3 weeks ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- ☆25Updated 6 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- ☆15Updated 7 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated 3 weeks ago