thomasp85 / PanVizGeneratorLinks
Create your own PanViz visualizations
☆21Updated 8 years ago
Alternatives and similar repositories for PanVizGenerator
Users that are interested in PanVizGenerator are comparing it to the libraries listed below
Sorting:
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- An easy way of MLSTyping your genomes in R.☆19Updated 5 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- R package for microbial pangenomics☆24Updated 3 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Updated last month
- Scalable relaxed clock phylogenetic dating☆28Updated 4 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- De novo VIral Genome Annotator☆24Updated 3 weeks ago
- Working with the outputs of sourmash in R☆28Updated 2 weeks ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆33Updated 2 weeks ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- ggtree version of plotTree.R☆18Updated 7 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 5 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 3 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- Influenza genome analysis Nextflow workflow☆24Updated this week
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Updated 2 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Updated 7 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last year
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 6 years ago
- Northern Arizona SNP Pipeline☆20Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 weeks ago